› 5mgt

X-ray diffraction
1.9Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171437 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
C-type lectin domain family 2 member D Chains: A, B
Molecule details ›
Chains: A, B
Length: 135 amino acids
Theoretical weight: 15.69 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9UHP7 (Residues: 72-191; Coverage: 63%)
Gene names: CLAX, CLEC2D, LLT1, OCIL
Sequence domains: Lectin C-type domain
Killer cell lectin-like receptor subfamily B member 1 Chains: C, D, E, F
Molecule details ›
Chains: C, D, E, F
Length: 146 amino acids
Theoretical weight: 17.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q12918 (Residues: 90-225; Coverage: 60%)
Gene names: CLEC5B, KLRB1, NKRP1A
Sequence domains: Lectin C-type domain

Ligands and Environments

3 bound ligands:
Ligand NAG 12 x NAG
Ligand SO4 7 x SO4
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 44.58Å b: 80.15Å c: 272.95Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.162 0.201
Expression system: Homo sapiens

Quick links

Citations

2 review citations

Small-angle X-ray scattering studies of enzymes.
Byer et al. (2023)
1 more

4 mentions without citation

Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
Bláha et al. (2022)
3 more