5mzv

X-ray diffraction
2.8Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-210993 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (7 distinct):
Interleukin-12 subunit beta Chain: A
Molecule details ›
Chain: A
Length: 328 amino acids
Theoretical weight: 37.21 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P29460 (Residues: 1-328; Coverage: 100%)
Gene names: IL12B, NKSF2
Sequence domains: Cytokine interleukin-12p40 C-terminus
Structure domains: Immunoglobulins
Interleukin-23 subunit alpha Chain: B
Molecule details ›
Chain: B
Length: 198 amino acids
Theoretical weight: 21.87 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9NPF7 (Residues: 1-189; Coverage: 100%)
Gene names: IL23A, SGRF, UNQ2498/PRO5798
Sequence domains: Interleukin 23 subunit alpha
Structure domains: Growth Hormone; Chain: A;
Interleukin-23 receptor Chain: C
Molecule details ›
Chain: C
Length: 330 amino acids
Theoretical weight: 38.38 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q5VWK5 (Residues: 1-317; Coverage: 49%)
Gene name: IL23R
Nanobody 22E11 Chain: D
Molecule details ›
Chain: D
Length: 156 amino acids
Theoretical weight: 16.83 KDa
Source organism: Lama glama
Expression system: Escherichia coli

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Spacegroup: P21
Unit cell:
a: 67.219Å b: 112.19Å c: 109.87Å
α: 90° β: 106.24° γ: 90°
R-values:
R R work R free
0.214 0.212 0.25
Expression systems:
  • Homo sapiens
  • Escherichia coli