› 5unj

X-ray diffraction
1.96Å resolution

Structure of Human Liver Receptor Homolog 1 in complex with PGC1a and RJW100

Released:
DOI: 10.2210/pdb5unj/pdb
PDB entry 5unj coloured by chain, front view.
PDB entry 5unj coloured by chain, side view.
PDB entry 5unj coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure and Dynamics of the Liver Receptor Homolog 1-PGC1α Complex.
Mays SG, Okafor CD, Tuntland ML, Whitby RJ, Dharmarajan V, Stec J, Griffin PR, Ortlund EA
Mol Pharmacol 92 1-11 (2017)
PMID: 28363985

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126312 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nuclear receptor subfamily 5 group A member 2 Chain: A
Molecule details ›
Chain: A
Length: 245 amino acids
Theoretical weight: 28.33 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O00482 (Residues: 299-541; Coverage: 45%)
Gene names: B1F, CPF, FTF, NR5A2
Sequence domains: Ligand-binding domain of nuclear hormone receptor
Structure domains: Retinoid X Receptor
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha Chain: C
Molecule details ›
Chain: C
Length: 14 amino acids
Theoretical weight: 1.52 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9UBK2 (Residues: 139-152; Coverage: 2%)
Gene names: LEM6, PGC1, PGC1A, PPARGC1, PPARGC1A

Ligands and Environments

1 bound ligand:
Ligand RJW 1 x RJW
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21212
Unit cell:
a: 66.18Å b: 84.027Å c: 45.355Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.199 0.226
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

2 review citations

The nuclear receptor superfamily: A structural perspective.
Weikum et al. (2018)
1 more

4 mentions without citation

Structure and Dynamics of the Liver Receptor Homolog 1-PGC1α Complex.
Mays et al. (2017)
3 more