› 5v01

X-ray diffraction
1.3Å resolution

Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Released:
DOI: 10.2210/pdb5v01/pdb
PDB entry 5v01 coloured by chain, front view.
PDB entry 5v01 coloured by chain, side view.
PDB entry 5v01 coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Entry authors: Borek D, Wawrzak Z, Grimshaw S, Sandoval J, Evdokimova E, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108045 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
CinA C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 173 amino acids
Theoretical weight: 18.14 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A6T8V7 (Residues: 1-170; Coverage: 100%)
Gene names: KPN_01597, ydeJ
Sequence domains: Competence-damaged protein
Structure domains: CinA-like

Ligands and Environments

2 bound ligands:
Ligand CL 10 x CL
Ligand NA 2 x NA
1 modified residue:
Ligand CSO 1 x CSO

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: P21
Unit cell:
a: 38.452Å b: 90.433Å c: 44.126Å
α: 90° β: 103.75° γ: 90°
R-values:
R R work R free
0.126 0.124 0.161
Expression system: Escherichia coli BL21(DE3)

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