› 5wlc

Electron Microscopy
3.8Å resolution

The complete structure of the small subunit processome

Released:
DOI: 10.2210/pdb5wlc/pdb
PDB entry 5wlc coloured by chain, front view.
PDB entry 5wlc coloured by chain, side view.
PDB entry 5wlc coloured by chain, top view.
Source organisms:
Primary publication:
The complete structure of the small-subunit processome.
Barandun J, Chaker-Margot M, Hunziker M, Molloy KR, Chait BT, Klinge S
Nat Struct Mol Biol 24 944-953 (2017)
PMID: 28945246
Related structures: EMD-8859

Function and Biology Details

Reaction catalysed: 
S-adenosyl-L-methionine + pseudouridine(1191) in yeast 18S rRNA = S-adenosyl-L-homocysteine + N(1)-methylpseudouridine(1191) in yeast 18S rRNA
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 70-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-241760 (preferred)
Entry contents:
63 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (66 distinct):
Small ribosomal subunit protein uS13A Chain: L3
Molecule details ›
Chain: L3
Length: 146 amino acids
Theoretical weight: 16.77 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX55 (Residues: 1-146; Coverage: 100%)
Gene names: D9461.35, RPS18A, YDR450W
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS4A Chain: L4
Molecule details ›
Chain: L4
Length: 261 amino acids
Theoretical weight: 29.47 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX35 (Residues: 1-261; Coverage: 100%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Sequence domains:
Small ribosomal subunit protein uS7 domain-containing protein Chain: L5
Molecule details ›
Chain: L5
Length: 225 amino acids
Theoretical weight: 25.07 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: A0A1L4AA68 (Residues: 1-225; Coverage: 100%)
Gene names: GI527_G0003379, RPS5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS6A Chain: L6
Molecule details ›
Chain: L6
Length: 236 amino acids
Theoretical weight: 27.05 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX37 (Residues: 1-236; Coverage: 100%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein eS7A Chain: L7
Molecule details ›
Chain: L7
Length: 190 amino acids
Theoretical weight: 21.66 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P26786 (Residues: 1-190; Coverage: 100%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein eS8A Chain: L8
Molecule details ›
Chain: L8
Length: 200 amino acids
Theoretical weight: 22.54 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX39 (Residues: 1-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS4A Chain: L9
Molecule details ›
Chain: L9
Length: 197 amino acids
Theoretical weight: 22.49 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: O13516 (Residues: 1-197; Coverage: 100%)
Gene names: RPS13A, RPS9A, YPL081W, YS11A
Sequence domains:
Small ribosomal subunit protein uS9A Chain: LC
Molecule details ›
Chain: LC
Length: 143 amino acids
Theoretical weight: 15.88 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX51 (Residues: 1-143; Coverage: 100%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein uS17A Chain: LD
Molecule details ›
Chain: LD
Length: 156 amino acids
Theoretical weight: 17.79 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX47 (Residues: 1-156; Coverage: 100%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Sequence domains:
Small ribosomal subunit protein uS8A Chain: LE
Molecule details ›
Chain: LE
Length: 130 amino acids
Theoretical weight: 14.65 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0C0W1 (Residues: 1-130; Coverage: 100%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein eS24A Chain: LF
Molecule details ›
Chain: LF
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CX31 (Residues: 1-135; Coverage: 100%)
Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS28A Chain: LG
Molecule details ›
Chain: LG
Length: 67 amino acids
Theoretical weight: 7.61 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q3E7X9 (Residues: 1-67; Coverage: 100%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Sequence domains: Ribosomal protein S28e
NET1-associated nuclear protein 1 Chain: LH
Molecule details ›
Chain: LH
Length: 896 amino acids
Theoretical weight: 100.96 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q02931 (Residues: 1-896; Coverage: 100%)
Gene names: NAN1, UTP17, YPL126W
Sequence domains: WD domain, G-beta repeat
U3 small nucleolar RNA-associated protein 8 Chain: LI
Molecule details ›
Chain: LI
Length: 713 amino acids
Theoretical weight: 65.57 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P53276 (Residues: 549-713; Coverage: 23%)
Gene names: UTP8, YGR128C
U3 small nucleolar RNA-associated protein 15 Chain: LJ
Molecule details ›
Chain: LJ
Length: 513 amino acids
Theoretical weight: 57.77 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q04305 (Residues: 1-513; Coverage: 100%)
Gene names: UTP15, YM9582.18, YMR093W
Sequence domains:
U3 small nucleolar RNA-associated protein 9 Chain: LK
Molecule details ›
Chain: LK
Length: 575 amino acids
Theoretical weight: 64.38 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P38882 (Residues: 1-575; Coverage: 100%)
Gene names: UTP9, YHR196W
U3 small nucleolar RNA-associated protein 5 Chain: LL
Molecule details ›
Chain: LL
Length: 643 amino acids
Theoretical weight: 72.08 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q04177 (Residues: 1-643; Coverage: 100%)
Gene names: D9509.17, UTP5, YDR398W
Sequence domains: Dip2/Utp12 Family
U3 small nucleolar RNA-associated protein 10 Chain: LM
Molecule details ›
Chain: LM
Length: 1769 amino acids
Theoretical weight: 200.02 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P42945 (Residues: 1-1769; Coverage: 100%)
Gene names: J0808, UTP10, YJL109C
Sequence domains:
U3 small nucleolar RNA-associated protein 4 Chain: LN
Molecule details ›
Chain: LN
Length: 776 amino acids
Theoretical weight: 87.32 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q06679 (Residues: 1-776; Coverage: 100%)
Gene names: UTP4, YDR324C
Sequence domains: WD domain, G-beta repeat
Periodic tryptophan protein 2 Chain: LO
Molecule details ›
Chain: LO
Length: 923 amino acids
Theoretical weight: 104.1 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P25635 (Residues: 1-923; Coverage: 100%)
Gene names: PWP2, UTP1, YCR057C, YCR55C/YCR57C/YCR58C
Sequence domains:
U3 small nucleolar RNA-associated protein 6 Chain: LP
Molecule details ›
Chain: LP
Length: 440 amino acids
Theoretical weight: 48.44 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q02354 (Residues: 1-326; Coverage: 74%)
Gene names: D9461.34, UTP6, YDR449C
Sequence domains: U3 small nucleolar RNA-associated protein 6
U3 small nucleolar RNA-associated protein 12 Chain: LQ
Molecule details ›
Chain: LQ
Length: 943 amino acids
Theoretical weight: 105.04 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q12220 (Residues: 1-943; Coverage: 100%)
Gene names: DIP2, L3116, L9233.1, UTP12, YLR129W
Sequence domains:
U3 small nucleolar RNA-associated protein 13 Chain: LR
Molecule details ›
Chain: LR
Length: 817 amino acids
Theoretical weight: 75.04 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q05946 (Residues: 648-817; Coverage: 21%)
Gene names: UTP13, YLR222C
Sequence domains: Utp13 specific WD40 associated domain
U3 small nucleolar RNA-associated protein 18 Chain: LS
Molecule details ›
Chain: LS
Length: 594 amino acids
Theoretical weight: 66.49 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P40362 (Residues: 1-594; Coverage: 100%)
Gene names: HRE594, J1098, UTP18, YJL069C
Sequence domains: WD domain, G-beta repeat
U3 small nucleolar RNA-associated protein 21 Chain: LT
Molecule details ›
Chain: LT
Length: 939 amino acids
Theoretical weight: 104.93 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q06078 (Residues: 1-939; Coverage: 100%)
Gene names: L8084.22, UTP21, YLR409C
Sequence domains:
Protein SOF1 Chain: LU
Molecule details ›
Chain: LU
Length: 489 amino acids
Theoretical weight: 56.89 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P33750 (Residues: 1-489; Coverage: 100%)
Gene names: L1339, SOF1, YLL011W
Sequence domains:
Ribosome biogenesis protein ENP2 Chain: LV
Molecule details ›
Chain: LV
Length: 707 amino acids
Theoretical weight: 81.86 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P48234 (Residues: 1-707; Coverage: 100%)
Gene names: ENP2, G6623, YGR145W
Sequence domains: NUC153 domain
U3 small nucleolar RNA-associated protein 7 Chain: LW
Molecule details ›
Chain: LW
Length: 554 amino acids
Theoretical weight: 62.42 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P40055 (Residues: 1-554; Coverage: 100%)
Gene names: KRE31, UTP7, YER082C
Sequence domains:
RNA cytidine acetyltransferase Chains: LX, LY
Molecule details ›
Chains: LX, LY
Length: 1056 amino acids
Theoretical weight: 95.34 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P53914 (Residues: 1-208; Coverage: 20%)
Gene names: KRE33, N1216, N1858, NAT10, RRA1, YNL132W
Sequence domains: tRNA(Met) cytidine acetyltransferase TmcA, N-terminal
U3 small nucleolar ribonucleoprotein protein IMP3 Chain: LZ
Molecule details ›
Chain: LZ
Length: 183 amino acids
Theoretical weight: 21.93 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P32899 (Residues: 1-183; Coverage: 100%)
Gene names: IMP3, YHR148W
Sequence domains:
U3 small nucleolar RNA-associated protein MPP10 Chain: NA
Molecule details ›
Chain: NA
Length: 593 amino acids
Theoretical weight: 67.04 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P47083 (Residues: 1-593; Coverage: 100%)
Gene names: J1411, MPP10, YJR002W, YJR83.5
Sequence domains: Mpp10 protein
Something about silencing protein 10 Chain: NB
Molecule details ›
Chain: NB
Length: 610 amino acids
Theoretical weight: 69.71 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q12136 (Residues: 1-610; Coverage: 100%)
Gene names: D1545, SAS10, UTP3, YDL153C
Sequence domains:
U3 small nucleolar ribonucleoprotein protein LCP5 Chain: NC
Molecule details ›
Chain: NC
Length: 357 amino acids
Theoretical weight: 40.86 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P40079 (Residues: 1-357; Coverage: 100%)
Gene names: LCP5, SYGP-ORF43, YER127W
Sequence domains: Sas10/Utp3/C1D family
U3 small nucleolar RNA-associated protein 16 Chain: ND
Molecule details ›
Chain: ND
Length: 214 amino acids
Theoretical weight: 23.84 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q08492 (Residues: 1-214; Coverage: 100%)
Gene names: BUD21, UTP16, YOR078W, YOR29-29
Sequence domains: U3 snoRNA associated
Protein FAF1 Chain: NE
Molecule details ›
Chain: NE
Length: 346 amino acids
Theoretical weight: 38.17 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P40546 (Residues: 1-346; Coverage: 100%)
Gene names: FAF1, YIL019W
Small ribosomal subunit protein uS15 Chain: NF
Molecule details ›
Chain: NF
Length: 151 amino acids
Theoretical weight: 17.06 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P05756 (Residues: 1-151; Coverage: 100%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Sequence domains:
Small ribosomal subunit protein uS11A Chain: NG
Molecule details ›
Chain: NG
Length: 137 amino acids
Theoretical weight: 14.56 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P06367 (Residues: 1-137; Coverage: 100%)
Gene names: CRY1, RPL59, RPS14A, YCR031C, YCR31C
Sequence domains: Ribosomal protein S11
U3 small nucleolar RNA-associated protein 22 Chain: NH
Molecule details ›
Chain: NH
Length: 1237 amino acids
Theoretical weight: 140.66 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P53254 (Residues: 1-1237; Coverage: 100%)
Gene names: UTP22, YGR090W
Sequence domains:
Ribosomal RNA-processing protein 7 Chain: NI
Molecule details ›
Chain: NI
Length: 297 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P25368 (Residues: 1-297; Coverage: 100%)
Gene names: RRP7, YCL031C, YCL184, YCL31C
Sequence domains:
rRNA biogenesis protein RRP5 Chain: NJ
Molecule details ›
Chain: NJ
Length: 1729 amino acids
Theoretical weight: 193.41 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q05022 (Residues: 1-1729; Coverage: 100%)
Gene names: FMI1, RRP5, YM9959.11C, YMR229C
Sequence domains: S1 RNA binding domain
KRR1 small subunit processome component Chain: NK
Molecule details ›
Chain: NK
Length: 316 amino acids
Theoretical weight: 37.23 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: B3LU25 (Residues: 1-316; Coverage: 100%)
Gene names: KRR1, SCRG_05350
Sequence domains:
Nucleolar protein 56 Chain: SA
Molecule details ›
Chain: SA
Length: 504 amino acids
Theoretical weight: 56.39 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q12460 (Residues: 1-504; Coverage: 100%)
Gene names: L8167.9, NOP56, SIK1, YLR197W
Sequence domains:
Nucleolar protein 58 Chain: SB
Molecule details ›
Chain: SB
Length: 511 amino acids
Theoretical weight: 53.81 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q12499 (Residues: 133-511; Coverage: 74%)
Gene names: NOP5, NOP58, O6108, YOR310C
Sequence domains: snoRNA binding domain, fibrillarin
rRNA 2'-O-methyltransferase fibrillarin Chains: SC, SD
Molecule details ›
Chains: SC, SD
Length: 327 amino acids
Theoretical weight: 34.53 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P15646 (Residues: 1-327; Coverage: 100%)
Gene names: D2870, LOT3, NOP1, YDL014W
Sequence domains: Fibrillarin
13 kDa ribonucleoprotein-associated protein Chains: SE, SF
Molecule details ›
Chains: SE, SF
Length: 126 amino acids
Theoretical weight: 13.58 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P39990 (Residues: 1-126; Coverage: 100%)
Gene names: SNU13, YEL026W
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal RNA-processing protein 9 Chain: SG
Molecule details ›
Chain: SG
Length: 573 amino acids
Theoretical weight: 65.15 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q06506 (Residues: 1-573; Coverage: 100%)
Gene names: RRP9, YPR137W
Sequence domains: WD domain, G-beta repeat
RNA 3'-terminal phosphate cyclase-like protein Chain: SH
Molecule details ›
Chain: SH
Length: 367 amino acids
Theoretical weight: 40.22 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q08096 (Residues: 1-367; Coverage: 100%)
Gene names: RCL1, RTC1, YOL010W
Sequence domains:
Ribosome biogenesis protein BMS1 Chain: SI
Molecule details ›
Chain: SI
Length: 1184 amino acids
Theoretical weight: 135.15 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q08965 (Residues: 1-418, 419-1183; Coverage: 100%)
Gene names: BMS1, YPL217C
Sequence domains:
Ribosomal RNA small subunit methyltransferase NEP1 Chains: SJ, SK
Molecule details ›
Chains: SJ, SK
Length: 252 amino acids
Theoretical weight: 27.94 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q06287 (Residues: 1-252; Coverage: 100%)
Gene names: EMG1, L9470.5, NEP1, YLR186W
Sequence domains: EMG1/NEP1 methyltransferase
rRNA-processing protein FCF1 Chain: SL
Molecule details ›
Chain: SL
Length: 189 amino acids
Theoretical weight: 21.65 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q05498 (Residues: 1-189; Coverage: 100%)
Gene names: D9651.9, FCF1, YDR339C
Sequence domains: Fcf1
U3 small nucleolar ribonucleoprotein protein IMP4 Chain: SM
Molecule details ›
Chain: SM
Length: 290 amino acids
Theoretical weight: 33.54 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P53941 (Residues: 1-290; Coverage: 100%)
Gene names: IMP4, N2353, YNL075W
Sequence domains: Brix domain
Ribosome biogenesis protein UTP30 Chain: SN
Molecule details ›
Chain: SN
Length: 274 amino acids
Theoretical weight: 31.67 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P36144 (Residues: 1-274; Coverage: 100%)
Gene names: UTP30, YKR060W
Sequence domains: Ribosomal protein L1p/L10e family
Pre-rRNA-processing protein PNO1 Chain: SO
Molecule details ›
Chain: SO
Length: 274 amino acids
Theoretical weight: 30.38 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q99216 (Residues: 1-274; Coverage: 100%)
Gene names: DIM2, O3513, PNO1, RRP20, YOR145C, YOR3513C
Sequence domains: Krr1 KH1 domain
Utp20 Chain: SP
Molecule details ›
Chain: SP
Length: 982 amino acids
Theoretical weight: 83.59 KDa
Source organism: Saccharomyces cerevisiae BY4741
rRNA-processing protein FCF2 Chain: SQ
Molecule details ›
Chain: SQ
Length: 217 amino acids
Theoretical weight: 25.69 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q12035 (Residues: 1-217; Coverage: 100%)
Gene names: FCF2, L2128, YLR051C
Sequence domains: Fcf2 pre-rRNA processing
Small ribosomal subunit protein uS12A Chain: SR
Molecule details ›
Chain: SR
Length: 145 amino acids
Theoretical weight: 16.07 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P0CY39 (Residues: 1-145; Coverage: 100%)
Gene names: NCAS_0A11700, RPS23A
Sequence domains: Ribosomal protein S12/S23
U3 small nucleolar RNA-associated protein 14 Chain: SS
Molecule details ›
Chain: SS
Length: 898 amino acids
Theoretical weight: 101.1 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q04500 (Residues: 1-899; Coverage: 100%)
Gene names: UTP14, YML093W
Sequence domains: Utp14 protein
Nucleolar complex protein 14 Chain: ST
Molecule details ›
Chain: ST
Length: 792 amino acids
Theoretical weight: 85.99 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q99207 (Residues: 1-810; Coverage: 98%)
Gene names: D1566, NOP14, UTP2, YDL148C
Sequence domains: Nop14-like family
Nucleolar complex protein 4 Chain: SU
Molecule details ›
Chain: SU
Length: 552 amino acids
Theoretical weight: 58.37 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: Q06512 (Residues: 147-513; Coverage: 67%)
Gene names: NOC4, UTP19, YPR144C
Sequence domains: CBF/Mak21 family
Regulator of rDNA transcription 14 Chain: SV
Molecule details ›
Chain: SV
Length: 206 amino acids
Theoretical weight: 21.04 KDa
Source organisms: UniProt:
  • Canonical: E9P9B2 (Residues: 1-77; Coverage: 37%)
  • Canonical: B5VKI1 (Residues: 78-206; Coverage: 63%)
Gene names: AWRI1631_90400, RRT14, YIL127C
Sequence domains: Regular of rDNA transcription protein 14
Unassigned peptides Chain: SX
Molecule details ›
Chain: SX
Length: 103 amino acids
Theoretical weight: 8.78 KDa
Source organism: Saccharomyces cerevisiae BY4741
U3 small nucleolar RNA-associated protein 11 Chain: SY
Molecule details ›
Chain: SY
Length: 250 amino acids
Theoretical weight: 29.81 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: B5VM59 (Residues: 1-250; Coverage: 100%)
Gene names: AWRI1631_111230, UTP11
Sequence domains: Utp11 protein
Essential nuclear protein 1 Chain: SZ
Molecule details ›
Chain: SZ
Length: 483 amino acids
Theoretical weight: 55.21 KDa
Source organism: Saccharomyces cerevisiae BY4741
UniProt:
  • Canonical: P38333 (Residues: 1-483; Coverage: 100%)
Gene names: ENP1, MEG1, YBR1635, YBR247C
Sequence domains: Bystin
5' ETS Chain: L0
Molecule details ›
Chain: L0
Length: 700 nucleotides
Theoretical weight: 225.54 KDa
18S pre-rRNA Chain: L1
Molecule details ›
Chain: L1
Length: 1807 nucleotides
Theoretical weight: 582.05 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
U3 snoRNA Chain: L2
Molecule details ›
Chain: L2
Length: 333 nucleotides
Theoretical weight: 106.5 KDa
Sequence domains: Fungal small nucleolar RNA U3

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-8859

Quick links

Citations

17 review citations

Eukaryotic Ribosome Assembly.
Baßler et al. (2019)
16 more

23 mentions without citation

Ribosome assembly coming into focus.
Klinge et al. (2019)
22 more