› 5x3p

X-ray diffraction
2Å resolution

Crystal structure of the UBX domain of human UBXD7

Released:
DOI: 10.2210/pdb5x3p/pdb
PDB entry 5x3p coloured by chain, front view.
PDB entry 5x3p coloured by chain, side view.
PDB entry 5x3p coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal structures of the UBX domain of human UBXD7 and its complex with p97 ATPase.
Li ZH, Wang Y, Xu M, Jiang T
Biochem Biophys Res Commun 486 94-100 (2017)
PMID: 28274878

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-131786 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UBX domain-containing protein 7 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 83 amino acids
Theoretical weight: 9.63 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O94888 (Residues: 410-489; Coverage: 16%)
Gene names: KIAA0794, UBXD7, UBXN7
Sequence domains: UBX domain
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 32.067Å b: 78.038Å c: 44.963Å
α: 90° β: 102.67° γ: 90°
R-values:
R R work R free
0.177 0.174 0.226
Expression system: Escherichia coli

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Citations

3 review citations

The AAA+ ATPase p97, a cellular multitool.
Stach et al. (2017)
2 more