› 5xqh

X-ray diffraction
2.04Å resolution

Crystal structure of truncated human Rogdi

Released:
DOI: 10.2210/pdb5xqh/pdb
PDB entry 5xqh coloured by chain, front view.
PDB entry 5xqh coloured by chain, side view.
PDB entry 5xqh coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tönz Syndrome.
Lee H, Jeong H, Choe J, Jun Y, Lim C, Lee C
Sci Rep 7 3972 (2017)
PMID: 28638151

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190443 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein rogdi homolog Chain: A
Molecule details ›
Chain: A
Length: 268 amino acids
Theoretical weight: 30.33 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9GZN7 (Residues: 11-276; Coverage: 93%)
Gene name: ROGDI
Sequence domains: Rogdi leucine zipper containing protein

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P21212
Unit cell:
a: 63.364Å b: 114.695Å c: 44.205Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.2 0.2 0.247
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Jaskolka et al. (2021)
1 more

1 mention without citation

The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tönz Syndrome.
Lee et al. (2017)