› 5y57

X-ray diffraction
1.96Å resolution

Crystal structure of a Novel Pyrethroid Hydrolase from Sphingobium faniae JZ-2

Released:
DOI: 10.2210/pdb5y57/pdb
PDB entry 5y57 coloured by chain, front view.
PDB entry 5y57 coloured by chain, side view.
PDB entry 5y57 coloured by chain, top view.
Source organism: Sphingobium faniae
Entry authors: Xu DQ, Ran TT, He J, Wang WW

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112056 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
AB hydrolase-1 domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 288 amino acids
Theoretical weight: 31.44 KDa
Source organism: Sphingobium faniae
Expression system: Escherichia coli
UniProt:
  • Canonical: D0VUS3 (Residues: 1-280; Coverage: 100%)
Gene name: pytH
Sequence domains: Alpha/beta hydrolase family

Ligands and Environments

2 bound ligands:
Ligand PMS 6 x PMS
Ligand SO4 6 x SO4
1 modified residue:
Ligand MSE 42 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P42212
Unit cell:
a: 168.453Å b: 168.453Å c: 123.593Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.258 0.255 0.309
Expression system: Escherichia coli

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