› 5y5r

X-ray diffraction
1.9Å resolution

Crystal structure of a novel Pyrethroid Hydrolase PytH with BIF

Released:
DOI: 10.2210/pdb5y5r/pdb
PDB entry 5y5r coloured by chain, front view.
PDB entry 5y5r coloured by chain, side view.
PDB entry 5y5r coloured by chain, top view.
Source organism: Sphingobium faniae
Entry authors: Xu DQ, Ran TT, Wang WW

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112056 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
AB hydrolase-1 domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 288 amino acids
Theoretical weight: 31.44 KDa
Source organism: Sphingobium faniae
Expression system: Escherichia coli
UniProt:
  • Canonical: D0VUS3 (Residues: 1-280; Coverage: 100%)
Gene name: pytH
Sequence domains: Alpha/beta hydrolase family

Ligands and Environments

2 bound ligands:
Ligand 8NL 6 x 8NL
Ligand SO4 6 x SO4
1 modified residue:
Ligand MSE 42 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P42212
Unit cell:
a: 168.857Å b: 168.857Å c: 123.864Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.276 0.273 0.322
Expression system: Escherichia coli

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