› 6byv

Solution NMR

Solution NMR structure of cysteine-rich calcium bound domains of very low density lipoprotein receptor

Released:
DOI: 10.2210/pdb6byv/pdb
PDB entry 6byv coloured by chain, ensemble of 20 models, front view.
PDB entry 6byv coloured by chain, ensemble of 20 models, side view.
PDB entry 6byv coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Primary publication:
Nuclear Magnetic Resonance Solution Structure of the Recombinant Fragment Containing Three Fibrin-Binding Cysteine-Rich Domains of the Very Low Density Lipoprotein Receptor.
Banerjee K, Yakovlev S, Gruschus JM, Medved L, Tjandra N
Biochemistry 57 4395-4403 (2018)
PMID: 29965730

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161351 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Very low-density lipoprotein receptor Chain: A
Molecule details ›
Chain: A
Length: 121 amino acids
Theoretical weight: 13.18 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P98155 (Residues: 70-190; Coverage: 14%)
Gene name: VLDLR
Sequence domains: Low-density lipoprotein receptor domain class A

Ligands and Environments

1 bound ligand:
Ligand CA 3 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 84%
Refinement method: simulated annealing
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Current View on the Molecular Mechanisms Underlying Fibrin(ogen)-Dependent Inflammation.
Yakovlev et al. (2022)
2 other articles

4 mentions without citation

The Reissner Fiber Is Highly Dynamic In Vivo and Controls Morphogenesis of the Spine.
Troutwine et al. (2020)
3 more