6c02

X-ray diffraction
1.94Å resolution

Human ectonucleotide pyrophosphatase / phosphodiesterase 3 (ENPP3, NPP3, CD203c), inactive (T205A), N594S, with alpha,beta-methylene-ATP (AMPCPP)

Released:
Source organism: Homo sapiens

Function and Biology Details

Reactions catalysed:
Hydrolytically removes 5'-nucleotides successively from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides
A nucleoside triphosphate + H(2)O = a nucleotide + diphosphate

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-127027 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (5 distinct):
Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 838 amino acids
Theoretical weight: 96.45 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: O14638 (Residues: 48-875; Coverage: 95%)
Gene names: ENPP3, PDNP3
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, FUC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CLSI BEAMLINE 08ID-1
Spacegroup: P21
Unit cell:
a: 78.656Å b: 169.457Å c: 79.062Å
α: 90° β: 103.87° γ: 90°
R-values:
R R work R free
0.168 0.166 0.197
Expression system: Spodoptera frugiperda