› 6dln

Solid-state NMR

Oligomeric Structure of the HIV gp41 MPER-TMD in Phospholipid Bilayers

Released:
DOI: 10.2210/pdb6dln/pdb
PDB entry 6dln coloured by chain, ensemble of 10 models, front view.
PDB entry 6dln coloured by chain, ensemble of 10 models, side view.
PDB entry 6dln coloured by chain, ensemble of 10 models, top view.
Source organism: HIV-1 M:B_HXB2R
Primary publication:
Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.
Kwon B, Lee M, Waring AJ, Hong M
J Am Chem Soc 140 8246-8259 (2018)
PMID: 29888593

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137976 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transmembrane protein gp41 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 39 amino acids
Theoretical weight: 4.67 KDa
Source organism: HIV-1 M:B_HXB2R
Expression system: Not provided
UniProt:
  • Canonical: P04578 (Residues: 665-703; Coverage: 5%)
Gene name: env

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 1%
Refinement method: molecular dynamics
Expression system: Not provided

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Citations

6 review citations

Lipid rafts and pathogens: the art of deception and exploitation.
Bukrinsky et al. (2020)
5 more

5 mentions without citation

From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.
Shcherbakov et al. (2022)
4 more