› 6gd8

X-ray diffraction
2.5Å resolution

Cytochrome c in complex with Sulfonato-calix[8]arene, P31 form

Released:
DOI: 10.2210/pdb6gd8/pdb
PDB entry 6gd8 coloured by chain, front view.
PDB entry 6gd8 coloured by chain, side view.
PDB entry 6gd8 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Auto-regulated Protein Assembly on a Supramolecular Scaffold.
Rennie ML, Fox GC, Pérez J, Crowley PB
Angew Chem Int Ed Engl 57 13764-13769 (2018)
PMID: 30109907

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132226 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c isoform 1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 108 amino acids
Theoretical weight: 12.04 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P00044 (Residues: 3-109; Coverage: 98%)
Gene names: CYC1, J1653, YJR048W
Sequence domains: Cytochrome c

Ligands and Environments

2 bound ligands:
Ligand HEC 4 x HEC
Ligand EVB 4 x EVB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P31
Unit cell:
a: 66.68Å b: 66.68Å c: 142.881Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.176 0.2
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 review citations

Protein Assembly by Design.
Zhu et al. (2021)
3 more

4 mentions without citation

Atomic Details of Carbon-Based Nanomolecules Interacting with Proteins.
Di Costanzo et al. (2020)
3 more