PDB 6az1 structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

structural constituent of ribosome

Biological process:

translation

Cellular component:

ribosome

Sequence domains:

106 more domains

Structure analysis Details

Assembly composition:

hetero 38-mer (preferred)

Assembly name:

40S ribosome subunit and RNA (preferred)

PDBe Complex ID:

PDB-CPX-104709 (preferred)

Entry contents:

33 distinct polypeptide molecules
5 distinct RNA molecules

Macromolecules (38 distinct):

Small ribosomal subunit protein eS1 Chain: A

Molecule details ›

Chain: A
Length: 264 amino acids
Theoretical weight: 30.09 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BRS2 (Residues: 1-264; Coverage: 100%)

Gene names: CGC20_0740, CGC20_0745, CGC21_5810, CGC21_5815, LDBPK_350400, LDBPK_350410, LDHU3_35.0560, LDHU3_35.0570, LdCL_350009100, LdCL_350009200
Sequence domains: Ribosomal S3Ae family

Small ribosomal subunit protein uS2 Chain: B

Molecule details ›

Chain: B
Length: 246 amino acids
Theoretical weight: 27.56 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A4IDS4 (Residues: 1-246; Coverage: 100%)

Gene names: LinJ36.5570, LinJ36.5680, LinJ_36_5240, LinJ_36_5350
Sequence domains: Ribosomal protein S2
Structure domains: Glucose-6-phosphate isomerase like protein; domain 1

40S ribosomal protein S3 Chain: C

Molecule details ›

Chain: C
Length: 219 amino acids
Theoretical weight: 24.51 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BQ25 (Residues: 124-342; Coverage: 64%)

Gene name: LDBPK_330960
Sequence domains:

Structure domains:

40S ribosomal protein S9, putative Chain: D

Molecule details ›

Chain: D
Length: 190 amino acids
Theoretical weight: 22.18 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S5H5Z2 (Residues: 1-190; Coverage: 100%)

Gene names: CGC20_1155, CGC20_29260, CGC21_12965, LDBPK_361310, LDHU3_07.0910, LDHU3_36.1650, LdCL_070012400, LdCL_360018200
Sequence domains:

40S ribosomal protein S4 Chain: E

Molecule details ›

Chain: E
Length: 273 amino acids
Theoretical weight: 30.71 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3Q8I8K3 (Residues: 1-273; Coverage: 100%)

Gene names: LDBPK_131120, LDHU3_13.1380, LDHU3_13.1390, LdCL_130016500, LdCL_130016600
Sequence domains:

Structure domains:

S5 DRBM domain-containing protein Chain: F

Molecule details ›

Chain: F
Length: 265 amino acids
Theoretical weight: 28.8 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S7X558 (Residues: 1-7, 8-264; Coverage: 100%)

Gene names: LDBPK_320460, LDHU3_32.0560, LdCL_320009500
Sequence domains:

Structure domains:

Small ribosomal subunit protein eS6 Chain: G

Molecule details ›

Chain: G
Length: 249 amino acids
Theoretical weight: 28.34 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: O44012 (Residues: 1-249; Coverage: 100%)

Gene names: RPS6, RS6
Sequence domains: Ribosomal protein S6e

Small ribosomal subunit protein uS7 domain-containing protein Chain: H

Molecule details ›

Chain: H
Length: 190 amino acids
Theoretical weight: 21.31 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A381MCG8 (Residues: 1-190; Coverage: 100%)

Gene name: LINJ_11_0960
Sequence domains: Ribosomal protein S7p/S5e
Structure domains: Ribosomal protein S7 domain

40S ribosomal protein S7 Chain: I

Molecule details ›

Chain: I
Length: 200 amino acids
Theoretical weight: 23.87 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S7WNJ7 (Residues: 1-200; Coverage: 100%)

Gene names: CGC20_4385, CGC20_4390, CGC21_17890, CGC21_17895, LDBPK_010440, LDHU3_01.0460, LDHU3_01.0470, LdCL_010009300, LdCL_010009400
Sequence domains: Ribosomal protein S7e

40S ribosomal protein S15A Chain: J

Molecule details ›

Chain: J
Length: 130 amino acids
Theoretical weight: 14.72 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BAV6 (Residues: 1-130; Coverage: 100%)

Gene names: CGC20_25145, CGC20_31130, CGC21_28485, LDBPK_111180, LDBPK_291920, LDHU3_11.1430, LDHU3_29.2740, LdCL_110017700, LdCL_290024900
Sequence domains: Ribosomal protein S8
Structure domains:

40S ribosomal protein S8 Chain: K

Molecule details ›

Chain: K
Length: 220 amino acids
Theoretical weight: 25.04 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3Q8ID68 (Residues: 1-220; Coverage: 100%)

Gene names: CGC21_16660, CGC21_16665, LDBPK_242160, LdCL_240027200, LdCL_240027300
Sequence domains: Ribosomal protein S8e

40S ribosomal protein S16 Chain: L

Molecule details ›

Chain: L
Length: 149 amino acids
Theoretical weight: 16.72 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BI96 (Residues: 1-149; Coverage: 100%)

Gene names: CGC20_4945, CGC21_31780, CGC21_31785, LDBPK_260840, LDBPK_260850, LDHU3_26.1100, LdCL_260014100, LdCL_260014200
Sequence domains: Ribosomal protein S9/S16
Structure domains: Ribosomal Protein S5; domain 2

Small ribosomal subunit protein uS10 domain-containing protein Chain: M

Molecule details ›

Chain: M
Length: 116 amino acids
Theoretical weight: 13.05 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BJI2 (Residues: 1-116; Coverage: 100%)

Gene names: CGC20_13545, CGC20_13555, CGC21_22050, LDBPK_281100, LDBPK_281120, LDHU3_28.1350, LDHU3_28.1370, LdCL_280015600, LdCL_280015800
Sequence domains: Ribosomal protein S10p/S20e
Structure domains: Ribosomal protein S10 domain

Plectin/eS10 N-terminal domain-containing protein Chain: N

Molecule details ›

Chain: N
Length: 153 amino acids
Theoretical weight: 17.43 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BTG4 (Residues: 1-153; Coverage: 100%)

Gene name: LDBPK_361040
Sequence domains: Plectin/S10 domain
Structure domains: Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain

40S ribosomal protein S14 Chain: O

Molecule details ›

Chain: O
Length: 144 amino acids
Theoretical weight: 15.61 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S7X3Z7 (Residues: 1-144; Coverage: 100%)

Gene names: LDBPK_303650, LDHU3_30.4850, LdCL_300041900
Sequence domains: Ribosomal protein S11
Structure domains: Ribosomal protein S11

40S ribosomal protein S23 Chain: P

Molecule details ›

Chain: P
Length: 143 amino acids
Theoretical weight: 15.95 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BFB6 (Residues: 1-143; Coverage: 100%)

Gene names: CGC20_15985, CGC20_22285, CGC20_22290, CGC21_34300, CGC21_34305, LDBPK_211300, LDBPK_211310, LDHU3_21.1530, LDHU3_21.1540, LdCL_210018100, LdCL_210018200
Sequence domains: Ribosomal protein S12/S23

40S ribosomal protein S12 Chain: Q

Molecule details ›

Chain: Q
Length: 141 amino acids
Theoretical weight: 15.61 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S5H6N5 (Residues: 1-141; Coverage: 100%)

Gene names: CGC20_17345, CGC21_33180, LDBPK_130460, LDHU3_13.0630, LdCL_130010000
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Structure domains: 60s Ribosomal Protein L30; Chain: A;

40S ribosomal protein S18 Chain: R

Molecule details ›

Chain: R
Length: 153 amino acids
Theoretical weight: 17.44 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BTF9 (Residues: 14-166; Coverage: 92%)

Gene names: LDBPK_360990, LDBPK_361000, LdCL_360015000
Sequence domains: Ribosomal protein S13/S18

Ribosomal protein S29 Chain: S

Molecule details ›

Chain: S
Length: 57 amino acids
Theoretical weight: 6.7 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BJV7 (Residues: 1-57; Coverage: 100%)

Gene names: LDBPK_282360, LDBPK_282650, LDHU3_28.3200, LDHU3_28.3580, LdCL_280028700, LdCL_280031600
Sequence domains: Ribosomal protein S14p/S29e
Structure domains: 30s Ribosomal Protein S14; Chain N

Small ribosomal subunit protein uS15 N-terminal domain-containing protein Chain: T

Molecule details ›

Chain: T
Length: 151 amino acids
Theoretical weight: 17.46 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3S7X790 (Residues: 1-151; Coverage: 100%)

Gene names: CGC20_9130, CGC20_9780, CGC21_5575, LDBPK_333300, LDHU3_19.0440, LDHU3_33.4780, LdCL_330040600
Sequence domains:

Structure domains: S15/NS1, RNA-binding

Small ribosomal subunit protein uS17 N-terminal domain-containing protein Chain: U

Molecule details ›

Chain: U
Length: 173 amino acids
Theoretical weight: 19.99 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: Q9TXA6 (Residues: 1-141; Coverage: 100%)

Gene names: LDHU3_20.1990, LDHU3_21.2120, LdCL_200021000, LdCL_210023700
Sequence domains:

Structure domains: OB fold (Dihydrolipoamide Acetyltransferase, E2P)

40S ribosomal protein S17 Chain: V

Molecule details ›

Chain: V
Length: 143 amino acids
Theoretical weight: 16.52 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BJZ5 (Residues: 1-143; Coverage: 100%)

Gene names: CGC20_12800, CGC20_12805, CGC21_22780, LDBPK_282750, LDBPK_282760, LDHU3_28.3730, LDHU3_28.3740, LdCL_280032600, LdCL_280032700
Sequence domains: Ribosomal S17
Structure domains: Ribosomal protein S17e-like

40S ribosomal protein S15 Chain: W

Molecule details ›

Chain: W
Length: 152 amino acids
Theoretical weight: 17.53 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BFQ0 (Residues: 1-101; Coverage: 100%)

Gene name: LDBPK_220310
Sequence domains: Ribosomal protein S19

40S ribosomal protein S19 protein Chain: X

Molecule details ›

Chain: X
Length: 179 amino acids
Theoretical weight: 20.19 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BR60 (Residues: 1-179; Coverage: 100%)

Gene name: LDBPK_342620
Sequence domains: Ribosomal protein S19e

40S ribosomal protein S21 Chain: Y

Molecule details ›

Chain: Y
Length: 159 amino acids
Theoretical weight: 16.67 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BAR6 (Residues: 122-202; Coverage: 40%)

Gene name: LDBPK_110780
Sequence domains: Ribosomal protein S21e
Structure domains: Hypothetical Cytosolic Protein; Chain: A;

40S ribosomal protein S24 Chain: Z

Molecule details ›

Chain: Z
Length: 137 amino acids
Theoretical weight: 15.81 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3Q8IKW0 (Residues: 1-137; Coverage: 100%)

Gene names: CGC20_28470, CGC21_13790, CGC21_13795, CGC21_13800, LDBPK_363020, LDHU3_36.4170, LDHU3_36.4180, LdCL_360036500, LdCL_360036600
Sequence domains: Ribosomal protein S24e
Structure domains: Alpha-Beta Plaits

40S ribosomal protein S25 Chain: a

Molecule details ›

Chain: a
Length: 120 amino acids
Theoretical weight: 13.07 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BHM6 (Residues: 1-120; Coverage: 100%)

Gene names: CGC20_2335, CGC20_26645, CGC21_25565, CGC21_8675, LDBPK_251220, LDBPK_340460, LDHU3_25.1560, LDHU3_34.0630, LdCL_250018000, LdCL_340009700
Sequence domains: S25 ribosomal protein
Structure domains: Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain

40S ribosomal protein S26 Chain: b

Molecule details ›

Chain: b
Length: 112 amino acids
Theoretical weight: 12.79 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BK95 (Residues: 1-112; Coverage: 100%)

Gene names: CGC20_13810, CGC20_6240, CGC21_36310, LDBPK_280570, LDBPK_303240, LDHU3_28.0690, LDHU3_30.4330, LdCL_280010400, LdCL_300038000
Sequence domains: Ribosomal protein S26e
Structure domains: Ribosomal protein S26e

40S_ribosomal_protein_S27-1_putative/GeneDB:LmjF. 36.3750 Chain: c

Molecule details ›

Chain: c
Length: 86 amino acids
Theoretical weight: 9.82 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: A0A3Q8ID11 (Residues: 1-86; Coverage: 100%)

Gene names: LDBPK_363940, LDHU3_18.0800, LDHU3_36.5280, LdCL_180011100, LdCL_360046400
Sequence domains: Ribosomal protein S27
Structure domains: Zn-binding ribosomal proteins

40S ribosomal protein S33 Chain: d

Molecule details ›

Chain: d
Length: 87 amino acids
Theoretical weight: 9.76 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BIH3 (Residues: 1-87; Coverage: 100%)

Gene names: LDBPK_261610, LDBPK_261620, LDHU3_26.2030, LDHU3_26.2040, LdCL_260021800, LdCL_260021900
Sequence domains: Ribosomal protein S28e
Structure domains: Nucleic acid-binding proteins

40S ribosomal protein S30 Chain: e

Molecule details ›

Chain: e
Length: 66 amino acids
Theoretical weight: 7.39 KDa
Source organism: Leishmania donovani
UniProt:

Canonical: E9BLG3 (Residues: 1-66; Coverage: 100%)

Gene names: LDBPK_300690, LDBPK_300710, LDHU3_30.0880, LDHU3_30.0890, LDHU3_30.0900, LdCL_300012000, LdCL_300012100, LdCL_300012200
Sequence domains: Ribosomal protein S30

Ubiquitin-ribosomal protein eL40 fusion protein Chain: f

Molecule details ›

Chain: f
Length: 152 amino acids
Theoretical weight: 17.02 KDa
Source organism: Leishmania donovani
UniProt: