PDB 6cdi structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

structural molecule activity

Biological process:

not assigned

Cellular component:

viral envelope

Sequence domains:

3 more domains

Structure analysis Details

Assembly composition:

hetero 24-mer (preferred)

Assembly name:

Transmembrane protein gp41 and IG-light lambda chain and IG-heavy chain and IG-light kappa chain and IG-heavy chain and IG-heavy chain and IG-light ka... (preferred)
show full assembly name

PDBe Complex ID:

PDB-CPX-212115 (preferred)

Entry contents:

8 distinct polypeptide molecules

Macromolecules (16 distinct):

Transmembrane protein gp41 Chains: A, D, c

Molecule details ›

Chains: A, D, c
Length: 153 amino acids
Theoretical weight: 17.16 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:

Canonical: Q2N0S7 (Residues: 509-661; Coverage: 18%)

Gene name: env
Sequence domains: Retroviral envelope protein

Envelope glycoprotein gp160 Chains: 2, C, d

Molecule details ›

Chains: 2, C, d
Length: 473 amino acids
Theoretical weight: 52.99 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Human immunodeficiency virus 1
UniProt:

Canonical: Q2N0S5 (Residues: 30-502; Coverage: 55%)

Gene name: env
Sequence domains: Envelope glycoprotein GP120

PGT122 Light Chain Chains: 6, N, n

Molecule details ›

Chains: 6, N, n
Length: 107 amino acids
Theoretical weight: 11.59 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Structure domains: Immunoglobulins

PGT122 Heavy Chain Chains: 5, M, m

Molecule details ›

Chains: 5, M, m
Length: 132 amino acids
Theoretical weight: 14.84 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

VRC03 light chain Chains: 7, R, r

Molecule details ›

Chains: 7, R, r
Length: 102 amino acids
Theoretical weight: 11.39 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Structure domains: Immunoglobulins

VRC03 Heavy Chain Chains: 8, Q, q

Molecule details ›

Chains: 8, Q, q
Length: 227 amino acids
Theoretical weight: 24.65 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Structure domains: Immunoglobulins

vFP16.02 Heavy Chain Chains: 3, H, h

Molecule details ›

Chains: 3, H, h
Length: 211 amino acids
Theoretical weight: 22.46 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

vFP16.02 Light Chain Chains: 4, L, l

Molecule details ›

Chains: 4, L, l
Length: 216 amino acids
Theoretical weight: 23.75 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Structure domains: Immunoglobulins