› 6ek7

X-ray diffraction
1.8Å resolution

YaxA from Yersinia enterocolitica

Released:
DOI: 10.2210/pdb6ek7/pdb
PDB entry 6ek7 coloured by chain, front view.
PDB entry 6ek7 coloured by chain, side view.
PDB entry 6ek7 coloured by chain, top view.
Source organism: Yersinia enterocolitica
Primary publication:
Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB.
Bräuning B, Bertosin E, Praetorius F, Ihling C, Schatt A, Adler A, Richter K, Sinz A, Dietz H, Groll M
Nat Commun 9 1806 (2018)
PMID: 29728606

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-166678 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YaxA Chain: A
Molecule details ›
Chain: A
Length: 410 amino acids
Theoretical weight: 45.88 KDa
Source organism: Yersinia enterocolitica
Expression system: Escherichia coli BL21

Ligands and Environments

1 bound ligand:
Ligand MPD 9 x MPD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: C2
Unit cell:
a: 203.76Å b: 24.05Å c: 109.42Å
α: 90° β: 113.92° γ: 90°
R-values:
R R work R free
0.191 0.19 0.228
Expression system: Escherichia coli BL21

Quick links

Citations

5 review citations

Evolution of Structural Biology through the Lens of Mass Spectrometry.
Kaur et al. (2019)
4 more

7 mentions without citation

Structural Basis of the Pore-Forming Toxin/Membrane Interaction.
Li et al. (2021)
6 more