› 6ek8

X-ray diffraction
4Å resolution

YaxB from Yersinia enterocolitica

Released:
DOI: 10.2210/pdb6ek8/pdb
PDB entry 6ek8 coloured by chain, front view.
PDB entry 6ek8 coloured by chain, side view.
PDB entry 6ek8 coloured by chain, top view.
Source organism: Yersinia enterocolitica
Primary publication:
Structure and mechanism of the two-component α-helical pore-forming toxin YaxAB.
Bräuning B, Bertosin E, Praetorius F, Ihling C, Schatt A, Adler A, Richter K, Sinz A, Dietz H, Groll M
Nat Commun 9 1806 (2018)
PMID: 29728606

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106622 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Alpha-xenorhabdolysin family binary toxin subunit B Chain: A
Molecule details ›
Chain: A
Length: 344 amino acids
Theoretical weight: 39.25 KDa
Source organism: Yersinia enterocolitica
Expression system: Escherichia coli
UniProt:
  • Canonical: A1JM52 (Residues: 2-344; Coverage: 100%)
Gene name: YE1985

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P6522
Unit cell:
a: 111.7Å b: 111.7Å c: 169.66Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.326 0.326 0.339
Expression system: Escherichia coli

Quick links

Citations

6 review citations

Evolution of Structural Biology through the Lens of Mass Spectrometry.
Kaur et al. (2019)
5 more

4 mentions without citation

Structural Basis of the Pore-Forming Toxin/Membrane Interaction.
Li et al. (2021)
3 more