6erg

X-ray diffraction
2.9Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-119854 (preferred)
Entry contents:
3 distinct polypeptide molecules
2 distinct DNA molecules
Macromolecules (5 distinct):
X-ray repair cross-complementing protein 6 Chains: A, D
Molecule details ›
Chains: A, D
Length: 544 amino acids
Theoretical weight: 62.63 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P12956 (Residues: 1-544; Coverage: 89%)
Gene names: G22P1, XRCC6
Sequence domains:
Structure domains:
X-ray repair cross-complementing protein 5 Chains: B, E
Molecule details ›
Chains: B, E
Length: 572 amino acids
Theoretical weight: 65.36 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P13010 (Residues: 2-555; Coverage: 76%)
Gene names: G22P2, XRCC5
Sequence domains:
Non-homologous end-joining factor 1 Chains: C, F
Molecule details ›
Chains: C, F
Length: 13 amino acids
Theoretical weight: 1.54 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9H9Q4 (Residues: 287-299; Coverage: 4%)
Gene names: NHEJ1, XLF
DNA (21-MER) Chains: H, K
Molecule details ›
Chains: H, K
Length: 21 nucleotides
Theoretical weight: 6.51 KDa
DNA (34-MER) Chains: M, R
Molecule details ›
Chains: M, R
Length: 34 nucleotides
Theoretical weight: 10.33 KDa

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P21
Unit cell:
a: 111.71Å b: 114.26Å c: 127.17Å
α: 90° β: 93.14° γ: 90°
R-values:
R R work R free
0.22 0.218 0.244
Expression systems:
  • Spodoptera frugiperda
  • Not provided