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› 6fcg

X-ray diffraction
2.6Å resolution

Crystal structure of an endo-laminarinase from Formosa Hel1_33_131

Released:
DOI: 10.2210/pdb6fcg/pdb
Model geometry
Fit model/data
PDB entry 6fcg coloured by chain, front view.
PDB entry 6fcg coloured by chain, side view.
PDB entry 6fcg coloured by chain, top view.
Source organism: Formosa sp. Hel1_33_131
Primary publication:
Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.
Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T
OpenAccess logo ISME J 12 2894-2906 (2018)
PMID: 30061707

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103379 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Endo-1,3-beta-glucanase btgC Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 430 amino acids
Theoretical weight: 48.95 KDa
Source organism: Formosa sp. Hel1_33_131
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A1D7Y259 (Residues: 1-430; Coverage: 100%)
Gene name: FORMB_24720
Sequence domains: Glycosyl hydrolases family 17

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PETRA III, DESY BEAMLINE P11
Spacegroup: P21
Unit cell:
a: 93.336Å b: 149.143Å c: 107.217Å
α: 90° β: 103.35° γ: 90°
R-values:
R R work R free
0.206 0.205 0.239
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

If you eat it, or secrete it, they will grow: the expanding list of nutrients utilized by human gut bacteria.
Glowacki et al. (2020)
1 more

2 mentions without citation

pH-Dependent Mechanisms of Influenza Infection Mediated by Hemagglutinin.
Caffrey et al. (2021)
1 more