› 6frm

X-ray diffraction
2.2Å resolution

Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4

Released:
DOI: 10.2210/pdb6frm/pdb
Model geometry
Fit model/data
PDB entry 6frm coloured by chain, front view.
PDB entry 6frm coloured by chain, side view.
PDB entry 6frm coloured by chain, top view.
Source organism: Methanothermococcus thermolithotrophicus
Primary publication:
Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Engilberge S, Riobé F, Wagner T, Di Pietro S, Breyton C, Franzetti B, Shima S, Girard E, Dumont E, Maury O
Chemistry 24 9739-9746 (2018)
PMID: 29806881

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-105067 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Flavodoxin-like domain-containing protein Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 410 amino acids
Theoretical weight: 46.24 KDa
Source organism: Methanothermococcus thermolithotrophicus
UniProt:
  • Canonical: A0A452CSW8 (Residues: 1-410; Coverage: 100%)
Sequence domains:
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand FMN 8 x FMN
Ligand 7MT 2 x 7MT
Ligand TB 14 x TB
Ligand CL 17 x CL
Ligand FE 4 x FE
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P21
Unit cell:
a: 84.17Å b: 147.875Å c: 146.059Å
α: 90° β: 90.4° γ: 90°
R-values:
R R work R free
0.178 0.177 0.209

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Citations

1 review citation

NMR Spectroscopy of supramolecular chemistry on protein surfaces.
Bayer et al. (2020)
1 other article