6ful

X-ray diffraction
1.65Å resolution

Crystal structure of UTX complexed with 5-hydroxy-4-keto-1-methyl-picolinate

Released:
Source organism: Homo sapiens
Primary publication:
In Silico Identification of JMJD3 Demethylase Inhibitors.
J Chem Inf Model 58 2151-2163 (2018)
PMID: 30226987

Function and Biology Details

Reaction catalysed:
(1a) a [histone H3]-N(6),N(6),N(6)-trimethyl-L-lysine(27) + 2-oxoglutarate + O(2) = a [histone H3]-N(6),N(6)-dimethyl-L-lysine(27) + succinate + formaldehyde + CO(2)
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-127530 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysine-specific demethylase 6A Chain: A
Molecule details ›
Chain: A
Length: 531 amino acids
Theoretical weight: 60.26 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O15550 (Residues: 877-1401; Coverage: 38%)
Gene names: KDM6A, UTX
Sequence domains:
Structure domains:

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P212121
Unit cell:
a: 79.181Å b: 82.801Å c: 93.156Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.208
Expression system: Escherichia coli BL21(DE3)