› 6gry

X-ray diffraction
2Å resolution

Glucuronoyl Esterase from Solibacter usitatus.

Released:
DOI: 10.2210/pdb6gry/pdb
PDB entry 6gry coloured by chain, front view.
PDB entry 6gry coloured by chain, side view.
PDB entry 6gry coloured by chain, top view.
Source organism: Candidatus Solibacter usitatus
Primary publication:
Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion.
Arnling Bååth J, Mazurkewich S, Knudsen RM, Poulsen JN, Olsson L, Lo Leggio L, Larsbrink J
Biotechnol Biofuels 11 213 (2018)
PMID: 30083226

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169658 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative acetyl xylan esterase Chain: A
Molecule details ›
Chain: A
Length: 397 amino acids
Theoretical weight: 43.84 KDa
Source organism: Candidatus Solibacter usitatus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q01YM8 (Residues: 23-417; Coverage: 95%)
Gene name: Acid_4275

Ligands and Environments

4 bound ligands:
Ligand PG4 2 x PG4
Ligand EDO 13 x EDO
Ligand PEG 6 x PEG
Ligand PGE 1 x PGE
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID30B
Spacegroup: P43212
Unit cell:
a: 54.579Å b: 54.579Å c: 284.112Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.188 0.239
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

5 review citations

A Review on Bacterial Contribution to Lignocellulose Breakdown into Useful Bio-Products.
Chukwuma et al. (2021)
4 more

3 mentions without citation

Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion.
Arnling Bååth et al. (2018)
2 more