We've built a new version of this page with an interactive 3D viewer. Try it out in beta and help us improve:

› 6gy7

X-ray diffraction
3.4Å resolution

Crystal structure of XaxB from Xenorhabdus nematophil

Released:
DOI: 10.2210/pdb6gy7/pdb
Model geometry
Fit model/data
PDB entry 6gy7 coloured by chain, front view.
PDB entry 6gy7 coloured by chain, side view.
PDB entry 6gy7 coloured by chain, top view.
Source organism: Xenorhabdus nematophila ATCC 19061
Primary publication:
Membrane insertion of α-xenorhabdolysin in near-atomic detail.
Schubert E, Vetter IR, Prumbaum D, Penczek PA, Raunser S
OpenAccess logo Elife 7 (2018)
PMID: 30010541

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112563 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
XaxB Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 367 amino acids
Theoretical weight: 41.89 KDa
Source organism: Xenorhabdus nematophila ATCC 19061
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: D3VB23 (Residues: 1-350; Coverage: 100%)
Gene names: XNC1_3767, xaxB

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P212121
Unit cell:
a: 88.7Å b: 99.41Å c: 194.15Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.266 0.264 0.304
Expression system: Escherichia coli BL21

Quick links

Citations

3 review citations

Structural Basis of the Pore-Forming Toxin/Membrane Interaction.
Li et al. (2021)
2 more

1 mention without citation

Structural and Mechanistic Features of ClyA-Like α-Pore-Forming Toxins.
Bräuning et al. (2018)