› 6itw

X-ray diffraction
2.4Å resolution

Crystal structure of Atu4351 from Agrobacterium tumefaciens

Released:
DOI: 10.2210/pdb6itw/pdb
PDB entry 6itw coloured by chain, front view.
PDB entry 6itw coloured by chain, side view.
PDB entry 6itw coloured by chain, top view.
Source organism: Agrobacterium fabrum str. C58
Primary publication:
Crystal structure of the type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens.
Shi L, Gao Z, Zhang T, Zhang H, Dong Y
Acta Crystallogr F Struct Biol Commun 75 153-158 (2019)
PMID: 30839288

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181442 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GAD-related domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 232 amino acids
Theoretical weight: 26.36 KDa
Source organism: Agrobacterium fabrum str. C58
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7CUQ2 (Residues: 1-1, 8-224; Coverage: 97%)
Gene name: Atu4351
Sequence domains:

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: BSRF BEAMLINE 3W1A
Spacegroup: P41212
Unit cell:
a: 92.445Å b: 92.445Å c: 86.157Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.219 0.215 0.25
Expression system: Escherichia coli

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Citations

1 citations in other articles

The T6SS-Dependent Effector Re78 of Rhizobium etli Mim1 Benefits Bacterial Competition.
De Sousa et al. (2023)

2 mentions without citation

Crystal structure of the type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens.
Shi et al. (2019)
1 more