6ncl

Electron Microscopy
3.5Å resolution

Near-atomic structure of icosahedrally averaged PBCV-1 capsid

Released:
Related structures: EMD-0436

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 6900-mer (preferred)
PDBe Complex ID:
PDB-CPX-128781 (preferred)
Entry contents:
15 distinct polypeptide molecules
Macromolecules (15 distinct):
Minor capsid protein P14 Chain: a0
Molecule details ›
Chain: a0
Length: 352 amino acids
Theoretical weight: 38.5 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98550 (Residues: 1-352; Coverage: 100%)
Gene name: A500L
Minor capsid protein P9 Chain: a1
Molecule details ›
Chain: a1
Length: 210 amino acids
Theoretical weight: 23.41 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98459 (Residues: 1-210; Coverage: 100%)
Gene name: A407L
Sequence domains: Family of unknown function (DUF5762)
Minor capsid protein P10 Chains: a2, a3
Minor capsid protein P7 Chain: a4
Minor capsid protein P6 Chain: a5
Penton capsid protein P1 Chain: a6
Minor capsid protein P12 Chain: a7
Minor capsid protein P5 Chain: a8
Minor capsid protein P11 Chains: a9, b0, b1, b2, b3, b4, b5, b7, b8, c0, c1, l5
Minor capsid protein P2 Chain: b6
Minor capsid protein P4 Chains: c2, c3, c4, c5
Minor capsid protein 3 Chains: c6, c7, c8
Minor capsid protein P8 Chain: c9
Major capsid protein Chains: d0, d1, d2, d3, d4, d5, d6, d7, d8, d9, e0, e1, e2, e3, e4, e5, e6, e7, e8, e9, f0, f1, f2, f3, f4, f5, f6, f7, f8, f9, g0, g1, g2, g3, g4, g5, g6, g7, g8, g9, h0, h1, h2, h3, h4, h5, h6, h7, h8, h9, i0, i1, i2, i3, i4, i5, i6, i7, i8, i9, j0, j1, j2, j3, j4, j5, j6, j7, j8, j9, k0, k1, k2, k3, k4, k5, k6, k7, k8, k9, l0, l1, l2, l3
Minor capsid protein P13 Chain: l4

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.5Å
Relevant EMDB volumes: EMD-0436