6ncl

Electron Microscopy
3.5Å resolution

Near-atomic structure of icosahedrally averaged PBCV-1 capsid

Released:
Related structures: EMD-0436

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 6900-mer (preferred)
PDBe Complex ID:
PDB-CPX-128781 (preferred)
Entry contents:
15 distinct polypeptide molecules
Macromolecules (15 distinct):
P14 Chain: a0
Molecule details ›
Chain: a0
Length: 352 amino acids
Theoretical weight: 38.5 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98550 (Residues: 1-352; Coverage: 100%)
Gene name: A500L
SAYSvFN domain-containing protein Chain: a1
Molecule details ›
Chain: a1
Length: 210 amino acids
Theoretical weight: 23.41 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98459 (Residues: 1-210; Coverage: 100%)
Gene name: A407L
Sequence domains: Family of unknown function (DUF5762)
P10 Chains: a2, a3
Molecule details ›
Chains: a2, a3
Length: 289 amino acids
Theoretical weight: 31.22 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98505 (Residues: 1-289; Coverage: 100%)
Gene name: A454L
P7 Chain: a4
Molecule details ›
Chain: a4
Length: 256 amino acids
Theoretical weight: 29.51 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84580 (Residues: 1-256; Coverage: 100%)
Gene name: A262/263L
PsbP C-terminal domain-containing protein Chain: a5
Molecule details ›
Chain: a5
Length: 216 amino acids
Theoretical weight: 24.04 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84523 (Residues: 1-216; Coverage: 100%)
Gene name: A203R
P1 Chain: a6
Molecule details ›
Chain: a6
Length: 170 amino acids
Theoretical weight: 18.28 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84626 (Residues: 1-170; Coverage: 100%)
Gene name: A310L
P12 Chain: a7
Molecule details ›
Chain: a7
Length: 151 amino acids
Theoretical weight: 17.72 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84459 (Residues: 1-151; Coverage: 100%)
Gene name: A139L
P5 Chain: a8
Molecule details ›
Chain: a8
Length: 146 amino acids
Theoretical weight: 16.46 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98576 (Residues: 1-146; Coverage: 100%)
Gene name: A526R
P11 Chains: a9, b0, b1, b2, b3, b4, b5, b7, b8, c0, c1, l5
Molecule details ›
Chains: a9, b0, b1, b2, b3, b4, b5, b7, b8, c0, c1, l5
Length: 207 amino acids
Theoretical weight: 23.32 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84666 (Residues: 1-207; Coverage: 100%)
Gene name: A352L
DUF5899 domain-containing protein Chain: b6
Molecule details ›
Chain: b6
Length: 576 amino acids
Theoretical weight: 63.89 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q84656 (Residues: 1-576; Coverage: 100%)
Gene name: A342L
Sequence domains: Family of unknown function (DUF5899)
P4 Chains: c2, c3, c4, c5
Molecule details ›
Chains: c2, c3, c4, c5
Length: 181 amino acids
Theoretical weight: 20.64 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: O41054 (Residues: 1-181; Coverage: 100%)
Gene name: A572R
Capsid protein Chains: c6, c7, c8
Molecule details ›
Chains: c6, c7, c8
Length: 171 amino acids
Theoretical weight: 19.12 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98573 (Residues: 1-171; Coverage: 100%)
Gene name: A523R
Capsid protein Chain: c9
Molecule details ›
Chain: c9
Length: 173 amino acids
Theoretical weight: 19.23 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: O41126 (Residues: 1-173; Coverage: 100%)
Gene name: A644R
Sequence domains: Family of unknown function (DUF5761)
Major capsid protein Chains: d0, d1, d2, d3, d4, d5, d6, d7, d8, d9, e0, e1, e2, e3, e4, e5, e6, e7, e8, e9, f0, f1, f2, f3, f4, f5, f6, f7, f8, f9, g0, g1, g2, g3, g4, g5, g6, g7, g8, g9, h0, h1, h2, h3, h4, h5, h6, h7, h8, h9, i0, i1, i2, i3, i4, i5, i6, i7, i8, i9, j0, j1, j2, j3, j4, j5, j6, j7, j8, j9, k0, k1, k2, k3, k4, k5, k6, k7, k8, k9, l0, l1, l2, l3
Molecule details ›
Chains: d0, d1, d2, d3, d4, d5, d6, d7, d8, d9, e0, e1, e2, e3, e4, e5, e6, e7, e8, e9, f0, f1, f2, f3, f4, f5, f6, f7, f8, f9, g0, g1, g2, g3, g4, g5, g6, g7, g8, g9, h0, h1, h2, h3, h4, h5, h6, h7, h8, h9, i0, i1, i2, i3, i4, i5, i6, i7, i8, i9, j0, j1, j2, j3, j4, j5, j6, j7, j8, j9, k0, k1, k2, k3, k4, k5, k6, k7, k8, k9, l0, l1, l2, l3
Length: 437 amino acids
Theoretical weight: 48.2 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: P30328 (Residues: 1-437; Coverage: 100%)
Gene name: A430L
Sequence domains:
P13 Chain: l4
Molecule details ›
Chain: l4
Length: 98 amino acids
Theoretical weight: 11.07 KDa
Source organism: Paramecium bursaria Chlorella virus 1
UniProt:
  • Canonical: Q98473 (Residues: 1-98; Coverage: 100%)
Gene name: A421R

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.5Å
Relevant EMDB volumes: EMD-0436