6qby

X-ray diffraction
2.09Å resolution

Crystal structure of VASH 2 in complex with SVBP

Released:

Function and Biology Details

Reaction catalysed:
Cleavage of the -Glu-|-Tyr bond to release the C-terminal tyrosine residue from the native tyrosinated tubulin. Inactive on Z-Glu-Tyr.
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-183206 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Tubulinyl-Tyr carboxypeptidase 2 Chains: A, C
Molecule details ›
Chains: A, C
Length: 257 amino acids
Theoretical weight: 30 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q86V25 (Residues: 40-295; Coverage: 72%)
Gene names: VASH2, VASHL
Sequence domains: Vasohibin
Small vasohibin-binding protein Chains: B, D
Molecule details ›
Chains: B, D
Length: 74 amino acids
Theoretical weight: 8.91 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q8N300 (Residues: 1-66; Coverage: 100%)
Gene names: CCDC23, SVBP
Sequence domains: Coiled-coil domain-containing protein 23

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P3121
Unit cell:
a: 119.887Å b: 119.887Å c: 102.636Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.192 0.19 0.23
Expression system: Escherichia coli BL21