6rm3

Electron Microscopy
3.4Å resolution

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 78-mer (preferred)
PDBe Complex ID:
PDB-CPX-167398 (preferred)
Entry contents:
75 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (78 distinct):
uL2 Chain: LA0
Molecule details ›
Chain: LA0
Length: 237 amino acids
Theoretical weight: 26.02 KDa
Source organism: Vairimorpha necatrix
uS2 Chain: SA0
Molecule details ›
Chain: SA0
Length: 264 amino acids
Theoretical weight: 29.69 KDa
Source organism: Vairimorpha necatrix
uL15 Chain: LAA
Molecule details ›
Chain: LAA
Length: 148 amino acids
Theoretical weight: 17.3 KDa
Source organism: Vairimorpha necatrix
eS26 Chain: SAA
Molecule details ›
Chain: SAA
Length: 104 amino acids
Theoretical weight: 12.11 KDa
Source organism: Vairimorpha necatrix
uL3 Chain: LB0
Molecule details ›
Chain: LB0
Length: 384 amino acids
Theoretical weight: 43.23 KDa
Source organism: Vairimorpha necatrix
eS1 Chain: SB0
Molecule details ›
Chain: SB0
Length: 237 amino acids
Theoretical weight: 26.98 KDa
Source organism: Vairimorpha necatrix
eL29 Chain: LBB
Molecule details ›
Chain: LBB
Length: 55 amino acids
Theoretical weight: 6.37 KDa
Source organism: Vairimorpha necatrix
eS27 Chain: SBB
Molecule details ›
Chain: SBB
Length: 94 amino acids
Theoretical weight: 10.61 KDa
Source organism: Vairimorpha necatrix
uL4 Chain: LC0
Molecule details ›
Chain: LC0
Length: 334 amino acids
Theoretical weight: 37.98 KDa
Source organism: Vairimorpha necatrix
uS5 Chain: SC0
Molecule details ›
Chain: SC0
Length: 237 amino acids
Theoretical weight: 25.9 KDa
Source organism: Vairimorpha necatrix
eL30 Chain: LCC
Molecule details ›
Chain: LCC
Length: 108 amino acids
Theoretical weight: 11.87 KDa
Source organism: Vairimorpha necatrix
eS28 Chain: SCC
Molecule details ›
Chain: SCC
Length: 67 amino acids
Theoretical weight: 7.64 KDa
Source organism: Vairimorpha necatrix
uL18 Chain: LD0
Molecule details ›
Chain: LD0
Length: 295 amino acids
Theoretical weight: 34.48 KDa
Source organism: Vairimorpha necatrix
uS3 Chain: SD0
Molecule details ›
Chain: SD0
Length: 215 amino acids
Theoretical weight: 23.72 KDa
Source organism: Vairimorpha necatrix
eL31 Chain: LDD
Molecule details ›
Chain: LDD
Length: 111 amino acids
Theoretical weight: 12.76 KDa
Source organism: Vairimorpha necatrix
uS14 Chain: SDD
Molecule details ›
Chain: SDD
Length: 68 amino acids
Theoretical weight: 7.88 KDa
Source organism: Vairimorpha necatrix
eL6 Chain: LE0
Molecule details ›
Chain: LE0
Length: 172 amino acids
Theoretical weight: 20.2 KDa
Source organism: Vairimorpha necatrix
eS4 Chain: SE0
Molecule details ›
Chain: SE0
Length: 262 amino acids
Theoretical weight: 29.93 KDa
Source organism: Vairimorpha necatrix
eL32 Chain: LEE
Molecule details ›
Chain: LEE
Length: 139 amino acids
Theoretical weight: 16.18 KDa
Source organism: Vairimorpha necatrix
eS30 Chain: SEE
Molecule details ›
Chain: SEE
Length: 60 amino acids
Theoretical weight: 6.92 KDa
Source organism: Vairimorpha necatrix
uL30 Chain: LF0
Molecule details ›
Chain: LF0
Length: 239 amino acids
Theoretical weight: 27.66 KDa
Source organism: Vairimorpha necatrix
uS7 Chain: SF0
Molecule details ›
Chain: SF0
Length: 189 amino acids
Theoretical weight: 20.97 KDa
Source organism: Vairimorpha necatrix
eL33 Chain: LFF
Molecule details ›
Chain: LFF
Length: 98 amino acids
Theoretical weight: 11.21 KDa
Source organism: Vairimorpha necatrix
eS31 Chain: SFF
Molecule details ›
Chain: SFF
Length: 151 amino acids
Theoretical weight: 17.09 KDa
Source organism: Vairimorpha necatrix
eL8 Chain: LG0
Molecule details ›
Chain: LG0
Length: 200 amino acids
Theoretical weight: 23.08 KDa
Source organism: Vairimorpha necatrix
eS6 Chain: SG0
Molecule details ›
Chain: SG0
Length: 217 amino acids
Theoretical weight: 24.95 KDa
Source organism: Vairimorpha necatrix
eL34 Chain: LGG
Molecule details ›
Chain: LGG
Length: 106 amino acids
Theoretical weight: 12.3 KDa
Source organism: Vairimorpha necatrix
RACK1 Chain: SGG
Molecule details ›
Chain: SGG
Length: 337 amino acids
Theoretical weight: 36.89 KDa
Source organism: Vairimorpha necatrix
uL6 Chain: LH0
Molecule details ›
Chain: LH0
Length: 186 amino acids
Theoretical weight: 21.04 KDa
Source organism: Vairimorpha necatrix
eS7 Chain: SH0
Molecule details ›
Chain: SH0
Length: 161 amino acids
Theoretical weight: 18.7 KDa
Source organism: Vairimorpha necatrix
uL29 Chain: LHH
Molecule details ›
Chain: LHH
Length: 122 amino acids
Theoretical weight: 14.8 KDa
Source organism: Vairimorpha necatrix
uL16 Chain: LI0
Molecule details ›
Chain: LI0
Length: 217 amino acids
Theoretical weight: 24.99 KDa
Source organism: Vairimorpha necatrix
eS8 Chain: SI0
Molecule details ›
Chain: SI0
Length: 166 amino acids
Theoretical weight: 18.89 KDa
Source organism: Vairimorpha necatrix
eL36 Chain: LII
Molecule details ›
Chain: LII
Length: 95 amino acids
Theoretical weight: 11.13 KDa
Source organism: Vairimorpha necatrix
uL5 Chain: LJ0
Molecule details ›
Chain: LJ0
Length: 171 amino acids
Theoretical weight: 19.63 KDa
Source organism: Vairimorpha necatrix
uS4 Chain: SJ0
Molecule details ›
Chain: SJ0
Length: 189 amino acids
Theoretical weight: 21.72 KDa
Source organism: Vairimorpha necatrix
eL37 Chain: LJJ
Molecule details ›
Chain: LJJ
Length: 93 amino acids
Theoretical weight: 10.7 KDa
Source organism: Vairimorpha necatrix
eL13 Chain: LL0
Molecule details ›
Chain: LL0
Length: 162 amino acids
Theoretical weight: 18.98 KDa
Source organism: Vairimorpha necatrix
uS17 Chain: SL0
Molecule details ›
Chain: SL0
Length: 158 amino acids
Theoretical weight: 18.23 KDa
Source organism: Vairimorpha necatrix
eL39 Chain: LLL
Molecule details ›
Chain: LLL
Length: 52 amino acids
Theoretical weight: 6.46 KDa
Source organism: Vairimorpha necatrix
eL14 Chain: LM0
Molecule details ›
Chain: LM0
Length: 105 amino acids
Theoretical weight: 11.99 KDa
Source organism: Vairimorpha necatrix
eL40 Chain: LMM
Molecule details ›
Chain: LMM
Length: 127 amino acids
Theoretical weight: 14.24 KDa
Source organism: Vairimorpha necatrix
eS12 Chain: SM0
Molecule details ›
Chain: SM0
Length: 131 amino acids
Theoretical weight: 14.73 KDa
Source organism: Vairimorpha necatrix
eL15 Chain: LN0
Molecule details ›
Chain: LN0
Length: 204 amino acids
Theoretical weight: 24.03 KDa
Source organism: Vairimorpha necatrix
uS15 Chain: SN0
Molecule details ›
Chain: SN0
Length: 149 amino acids
Theoretical weight: 17.07 KDa
Source organism: Vairimorpha necatrix
MDF2 Chain: LNN
Molecule details ›
Chain: LNN
Length: 160 amino acids
Theoretical weight: 19.31 KDa
Source organism: Vairimorpha necatrix
MDF1 Chain: SNN
Molecule details ›
Chain: SNN
Length: 168 amino acids
Theoretical weight: 19.26 KDa
Source organism: Vairimorpha necatrix
uL13 Chain: LO0
Molecule details ›
Chain: LO0
Length: 192 amino acids
Theoretical weight: 22.34 KDa
Source organism: Vairimorpha necatrix
uS11 Chain: SO0
Molecule details ›
Chain: SO0
Length: 135 amino acids
Theoretical weight: 14.47 KDa
Source organism: Vairimorpha necatrix
eL42 Chain: LOO
Molecule details ›
Chain: LOO
Length: 103 amino acids
Theoretical weight: 12.02 KDa
Source organism: Vairimorpha necatrix
uL22 Chain: LP0
Molecule details ›
Chain: LP0
Length: 169 amino acids
Theoretical weight: 19.43 KDa
Source organism: Vairimorpha necatrix
uS19 Chain: SP0
Molecule details ›
Chain: SP0
Length: 143 amino acids
Theoretical weight: 16.04 KDa
Source organism: Vairimorpha necatrix
eL43 Chain: LPP
Molecule details ›
Chain: LPP
Length: 89 amino acids
Theoretical weight: 9.83 KDa
Source organism: Vairimorpha necatrix
eL18 Chain: LQ0
Molecule details ›
Chain: LQ0
Length: 193 amino acids
Theoretical weight: 21.88 KDa
Source organism: Vairimorpha necatrix
uS9 Chain: SQ0
Molecule details ›
Chain: SQ0
Length: 155 amino acids
Theoretical weight: 17.55 KDa
Source organism: Vairimorpha necatrix
eL19 Chain: LR0
Molecule details ›
Chain: LR0
Length: 175 amino acids
Theoretical weight: 20.39 KDa
Source organism: Vairimorpha necatrix
eS17 Chain: SR0
Molecule details ›
Chain: SR0
Length: 119 amino acids
Theoretical weight: 13.96 KDa
Source organism: Vairimorpha necatrix
eL20 Chain: LS0
Molecule details ›
Chain: LS0
Length: 180 amino acids
Theoretical weight: 20.99 KDa
Source organism: Vairimorpha necatrix
uS13 Chain: SS0
Molecule details ›
Chain: SS0
Length: 160 amino acids
Theoretical weight: 18.05 KDa
Source organism: Vairimorpha necatrix
eL21 Chain: LT0
Molecule details ›
Chain: LT0
Length: 160 amino acids
Theoretical weight: 18.68 KDa
Source organism: Vairimorpha necatrix
eS19 Chain: ST0
Molecule details ›
Chain: ST0
Length: 133 amino acids
Theoretical weight: 15.28 KDa
Source organism: Vairimorpha necatrix
eL22 Chain: LU0
Molecule details ›
Chain: LU0
Length: 107 amino acids
Theoretical weight: 12.33 KDa
Source organism: Vairimorpha necatrix
uS10 Chain: SU0
Molecule details ›
Chain: SU0
Length: 101 amino acids
Theoretical weight: 11.51 KDa
Source organism: Vairimorpha necatrix
uL14 Chain: LV0
Molecule details ›
Chain: LV0
Length: 146 amino acids
Theoretical weight: 16.05 KDa
Source organism: Vairimorpha necatrix
eS21 Chain: SV0
Molecule details ›
Chain: SV0
Length: 67 amino acids
Theoretical weight: 7.58 KDa
Source organism: Vairimorpha necatrix
eL24 Chain: LW0
Molecule details ›
Chain: LW0
Length: 91 amino acids
Theoretical weight: 10.36 KDa
Source organism: Vairimorpha necatrix
uS8 Chain: SW0
Molecule details ›
Chain: SW0
Length: 127 amino acids
Theoretical weight: 14.52 KDa
Source organism: Vairimorpha necatrix
uL23 Chain: LX0
Molecule details ›
Chain: LX0
Length: 102 amino acids
Theoretical weight: 11.57 KDa
Source organism: Vairimorpha necatrix
uS12 Chain: SX0
Molecule details ›
Chain: SX0
Length: 140 amino acids
Theoretical weight: 15.49 KDa
Source organism: Vairimorpha necatrix
msL1 Chain: LXX
Molecule details ›
Chain: LXX
Length: 73 amino acids
Theoretical weight: 8.75 KDa
Source organism: Vairimorpha necatrix
uL24 Chain: LY0
Molecule details ›
Chain: LY0
Length: 139 amino acids
Theoretical weight: 16.13 KDa
Source organism: Vairimorpha necatrix
eS24 Chain: SY0
Molecule details ›
Chain: SY0
Length: 133 amino acids
Theoretical weight: 15.53 KDa
Source organism: Vairimorpha necatrix
eL27 Chain: LZ0
Molecule details ›
Chain: LZ0
Length: 126 amino acids
Theoretical weight: 14.49 KDa
Source organism: Vairimorpha necatrix
eS25 Chain: SZ0
Molecule details ›
Chain: SZ0
Length: 123 amino acids
Theoretical weight: 13.94 KDa
Source organism: Vairimorpha necatrix
eS10 Chain: SK0
Molecule details ›
Chain: SK0
Length: 99 amino acids
Theoretical weight: 11.8 KDa
Source organism: Vairimorpha necatrix
16S ribosomal RNA Chain: S60
Molecule details ›
Chain: S60
Length: 1244 nucleotides
Theoretical weight: 401.3 KDa
Sequence domains: Microsporidia small subunit ribosomal RNA
5S ribosomal RNA Chain: L70
Molecule details ›
Chain: L70
Length: 119 nucleotides
Theoretical weight: 38.38 KDa
Sequence domains: 5S ribosomal RNA
23S ribosomal RNA Chain: L50
Molecule details ›
Chain: L50
Length: 2484 nucleotides
Theoretical weight: 799.49 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-4935