PDB 6ybw structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Biochemical function:

RNA binding

Biological process:

translation

Cellular component:

cytoplasm

Sequence domains:

81 more domains

Structure analysis Details

Assembly composition:

hetero 26-mer (preferred)

PDBe Complex ID:

PDB-CPX-131135 (preferred)

Entry contents:

24 distinct polypeptide molecules
2 distinct RNA molecules

Macromolecules (26 distinct):

Small ribosomal subunit protein eS4, X isoform Chain: C

Molecule details ›

Chain: C
Length: 263 amino acids
Theoretical weight: 29.65 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62701 (Residues: 1-263; Coverage: 100%)

Gene names: CCG2, RPS4, RPS4X, SCAR
Sequence domains:

Small ribosomal subunit protein uS17 Chain: B

Molecule details ›

Chain: B
Length: 157 amino acids
Theoretical weight: 18.32 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62280 (Residues: 1-157; Coverage: 99%)

Gene name: RPS11
Sequence domains:

Small ribosomal subunit protein uS12 Chain: E

Molecule details ›

Chain: E
Length: 143 amino acids
Theoretical weight: 15.84 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62266 (Residues: 1-143; Coverage: 100%)

Gene name: RPS23
Sequence domains: Ribosomal protein S12/S23

Small ribosomal subunit protein uS4 Chain: D

Molecule details ›

Chain: D
Length: 194 amino acids
Theoretical weight: 22.64 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P46781 (Residues: 1-194; Coverage: 100%)

Gene name: RPS9
Sequence domains:

Small ribosomal subunit protein eS7 Chain: G

Molecule details ›

Chain: G
Length: 194 amino acids
Theoretical weight: 22.17 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62081 (Residues: 1-194; Coverage: 100%)

Gene name: RPS7
Sequence domains: Ribosomal protein S7e

Small ribosomal subunit protein eS30 Chain: F

Molecule details ›

Chain: F
Length: 59 amino acids
Theoretical weight: 6.67 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62861 (Residues: 75-133; Coverage: 44%)

Gene name: FAU
Sequence domains: Ribosomal protein S30

Small ribosomal subunit protein eS27 Chain: H

Molecule details ›

Chain: H
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P42677 (Residues: 1-84; Coverage: 100%)

Gene names: MPS1, RPS27
Sequence domains: Ribosomal protein S27

Small ribosomal subunit protein eS21 Chain: K

Molecule details ›

Chain: K
Length: 83 amino acids
Theoretical weight: 9.12 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P63220 (Residues: 1-83; Coverage: 100%)

Gene name: RPS21
Sequence domains: Ribosomal protein S21e

Small ribosomal subunit protein uS8 Chain: J

Molecule details ›

Chain: J
Length: 130 amino acids
Theoretical weight: 14.87 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62244 (Residues: 1-130; Coverage: 100%)

Gene names: OK/SW-cl.82, RPS15A
Sequence domains: Ribosomal protein S8

Small ribosomal subunit protein eS17 Chain: M

Molecule details ›

Chain: M
Length: 135 amino acids
Theoretical weight: 15.58 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P08708 (Residues: 1-135; Coverage: 100%)

Gene names: RPS17, RPS17L
Sequence domains: Ribosomal S17

Small ribosomal subunit protein uS5 Chain: L

Molecule details ›

Chain: L
Length: 293 amino acids
Theoretical weight: 31.38 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P15880 (Residues: 1-293; Coverage: 100%)

Gene names: RPS2, RPS4
Sequence domains:

Small ribosomal subunit protein eS1 Chain: O

Molecule details ›

Chain: O
Length: 264 amino acids
Theoretical weight: 30 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P61247 (Residues: 1-264; Coverage: 100%)

Gene names: FTE1, MFTL, RPS3A
Sequence domains: Ribosomal S3Ae family

Small ribosomal subunit protein uS2 Chain: N

Molecule details ›

Chain: N
Length: 295 amino acids
Theoretical weight: 32.88 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P08865 (Residues: 1-295; Coverage: 100%)

Gene names: LAMBR, LAMR1, RPSA
Sequence domains:

Small ribosomal subunit protein eS26 Chain: Q

Molecule details ›

Chain: Q
Length: 115 amino acids
Theoretical weight: 13.05 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62854 (Residues: 1-115; Coverage: 100%)

Gene name: RPS26
Sequence domains: Ribosomal protein S26e

Small ribosomal subunit protein uS11 Chain: P

Molecule details ›

Chain: P
Length: 151 amino acids
Theoretical weight: 16.3 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62263 (Residues: 1-151; Coverage: 100%)

Gene names: PRO2640, RPS14
Sequence domains: Ribosomal protein S11

Small ribosomal subunit protein eS6 Chain: S

Molecule details ›

Chain: S
Length: 249 amino acids
Theoretical weight: 28.75 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62753 (Residues: 1-249; Coverage: 100%)

Gene names: OK/SW-cl.2, RPS6
Sequence domains: Ribosomal protein S6e

Small ribosomal subunit protein eS8 Chain: R

Molecule details ›

Chain: R
Length: 208 amino acids
Theoretical weight: 24.26 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62241 (Residues: 1-208; Coverage: 100%)

Gene names: OK/SW-cl.83, RPS8
Sequence domains: Ribosomal protein S8e

Small ribosomal subunit protein eS24 Chain: T

Molecule details ›

Chain: T
Length: 133 amino acids
Theoretical weight: 15.46 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62847 (Residues: 1-133; Coverage: 100%)

Gene name: RPS24
Sequence domains: Ribosomal protein S24e

Eukaryotic translation initiation factor 1A, X-chromosomal Chain: q

Molecule details ›

Chain: q
Length: 144 amino acids
Theoretical weight: 16.49 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:

Canonical: P47813 (Residues: 1-144; Coverage: 100%)

Gene names: EIF1A, EIF1AX, EIF4C
Sequence domains: Translation initiation factor 1A / IF-1

Eukaryotic translation initiation factor 1 Chain: p

Molecule details ›

Chain: p
Length: 113 amino acids
Theoretical weight: 12.75 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:

Canonical: P41567 (Residues: 1-113; Coverage: 100%)

Gene names: EIF1, SUI1
Sequence domains: Translation initiation factor SUI1

Small ribosomal subunit protein uS15 Chain: I

Molecule details ›

Chain: I
Length: 151 amino acids
Theoretical weight: 17.26 KDa
Source organism: Homo sapiens
UniProt:

Canonical: P62277 (Residues: 1-151; Coverage: 100%)

Gene name: RPS13
Sequence domains:

Eukaryotic translation initiation factor 3 subunit J Chain: z

Molecule details ›

Chain: z
Length: 258 amino acids
Theoretical weight: 29.11 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt: