› 6ydp

Electron Microscopy
3Å resolution

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Released:
DOI: 10.2210/pdb6ydp/pdb
PDB entry 6ydp coloured by chain, front view.
PDB entry 6ydp coloured by chain, side view.
PDB entry 6ydp coloured by chain, top view.
Source organisms:
Primary publication:
Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.
Kummer E, Ban N
EMBO J 39 e104820 (2020)
PMID: 32602580
Related structures: EMD-10778

Function and Biology Details

Reaction catalysed: 
N-substituted aminoacyl-tRNA + H(2)O = N-substituted amino acid + tRNA
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 94-mer (preferred)
PDBe Complex ID:
PDB-CPX-236629 (preferred)
Entry contents:
83 distinct polypeptide molecules
4 distinct RNA molecules
Macromolecules (87 distinct):
39S ribosomal protein L27, mitochondrial Chain: B0
Molecule details ›
Chain: B0
Length: 148 amino acids
Theoretical weight: 15.94 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1U0F6 (Residues: 1-148; Coverage: 100%)
Gene name: MRPL27
Sequence domains: Ribosomal L27 protein
39S ribosomal protein L20, mitochondrial isoform 1 Chain: BU
Molecule details ›
Chain: BU
Length: 149 amino acids
Theoretical weight: 17.55 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZU56 (Residues: 1-149; Coverage: 100%)
Gene name: MRPL20
Sequence domains: Ribosomal protein L20
Large ribosomal subunit protein bL21m Chain: BV
Molecule details ›
Chain: BV
Length: 209 amino acids
Theoretical weight: 23.15 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RY70 (Residues: 1-209; Coverage: 100%)
Sequence domains: Ribosomal prokaryotic L21 protein
Large ribosomal subunit protein uL22m Chain: BW
Molecule details ›
Chain: BW
Length: 210 amino acids
Theoretical weight: 24.31 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TXR4 (Residues: 1-210; Coverage: 100%)
Gene name: MRPL22
Sequence domains: Ribosomal protein L22p/L17e
uL23m Chain: BX
Molecule details ›
Chain: BX
Length: 150 amino acids
Theoretical weight: 17.64 KDa
Source organism: Sus scrofa
Large ribosomal subunit protein uL24m Chain: BY
Molecule details ›
Chain: BY
Length: 216 amino acids
Theoretical weight: 24.89 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RHJ1 (Residues: 1-216; Coverage: 100%)
Gene name: MRPL24
Sequence domains:
Large ribosomal subunit protein mL37 Chain: Ba
Molecule details ›
Chain: Ba
Length: 423 amino acids
Theoretical weight: 47.92 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287BIV6 (Residues: 1-423; Coverage: 100%)
Gene name: MRPL37
Sequence domains: Mitochondrial 28S ribosomal protein S30 (PDCD9)
Large ribosomal subunit protein mL38 Chain: Bb
Molecule details ›
Chain: Bb
Length: 380 amino acids
Theoretical weight: 44.66 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RW03 (Residues: 1-380; Coverage: 100%)
Gene name: MRPL38
Sequence domains: Phosphatidylethanolamine-binding protein
TGS domain-containing protein Chain: Bc
Molecule details ›
Chain: Bc
Length: 334 amino acids
Theoretical weight: 38.52 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SHP6 (Residues: 1-303, 304-318; Coverage: 100%)
Gene name: MRPL39
Large ribosomal subunit protein mL40 Chain: Bd
Molecule details ›
Chain: Bd
Length: 206 amino acids
Theoretical weight: 24.08 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZP98 (Residues: 1-162; Coverage: 100%)
Gene name: MRPL40
Sequence domains: Mitochondrial ribosomal protein L28
39S ribosomal protein L41, mitochondrial Chain: Be
Molecule details ›
Chain: Be
Length: 135 amino acids
Theoretical weight: 15.07 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D1F1K9 (Residues: 1-135; Coverage: 100%)
Gene name: MRPL41
Sequence domains: Mitochondrial ribosomal protein L27
Large ribosomal subunit protein mL42 Chain: Bf
Molecule details ›
Chain: Bf
Length: 142 amino acids
Theoretical weight: 16.68 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287BQA1 (Residues: 1-142; Coverage: 100%)
Gene name: MRPL42
Sequence domains: Mitochondrial 28S ribosomal protein S32
Large ribosomal subunit protein mL43 Chain: Bg
Molecule details ›
Chain: Bg
Length: 159 amino acids
Theoretical weight: 17.73 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1S8U4 (Residues: 1-159; Coverage: 100%)
Sequence domains: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Large ribosomal subunit protein mL44 Chain: Bh
Molecule details ›
Chain: Bh
Length: 332 amino acids
Theoretical weight: 37.53 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SR64 (Residues: 1-332; Coverage: 100%)
Gene name: MRPL44
Large ribosomal subunit protein mL45 Chain: Bi
Molecule details ›
Chain: Bi
Length: 306 amino acids
Theoretical weight: 35.33 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LGM5 (Residues: 1-306; Coverage: 100%)
Gene name: MRPL45
Sequence domains: Tim44-like domain
Large ribosomal subunit protein mL46 Chain: Bj
Molecule details ›
Chain: Bj
Length: 279 amino acids
Theoretical weight: 32.22 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SRT0 (Residues: 1-279; Coverage: 100%)
Gene name: MRPL46
Sequence domains: 39S mitochondrial ribosomal protein L46
Small ribosomal subunit protein uS10 domain-containing protein Chain: Bk
Molecule details ›
Chain: Bk
Length: 269 amino acids
Theoretical weight: 29.94 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A480J9Z6 (Residues: 1-269; Coverage: 100%)
Gene name: MRPL48
Sequence domains: Ribosomal protein S10p/S20e
Large ribosomal subunit protein mL49 Chain: Bl
Molecule details ›
Chain: Bl
Length: 166 amino acids
Theoretical weight: 18.96 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0R4J8D6 (Residues: 1-122, 123-129; Coverage: 94%)
Gene name: MRPL49
Sequence domains: Mitochondrial large subunit ribosomal protein (Img2)
Large ribosomal subunit protein mL50 Chain: Bm
Molecule details ›
Chain: Bm
Length: 198 amino acids
Theoretical weight: 22.79 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3L9H6 (Residues: 1-198; Coverage: 100%)
Gene name: MRPL50
Sequence domains: Ribosomal subunit 39S
Large ribosomal subunit protein mL51 Chain: Bn
Molecule details ›
Chain: Bn
Length: 128 amino acids
Theoretical weight: 15.25 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D1P1C8 (Residues: 1-128; Coverage: 100%)
Gene name: MRPL51
Sequence domains: Mitochondrial ribosomal subunit
Large ribosomal subunit protein mL52 Chain: Bo
Molecule details ›
Chain: Bo
Length: 124 amino acids
Theoretical weight: 13.81 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1S9B7 (Residues: 38-47, 48-160; Coverage: 77%)
Gene name: MRPL52
Sequence domains: Mitoribosomal protein mL52
mL53 Chain: Bp
Molecule details ›
Chain: Bp
Length: 112 amino acids
Theoretical weight: 12.02 KDa
Source organism: Sus scrofa
Large ribosomal subunit protein mL54 Chain: Bq
Molecule details ›
Chain: Bq
Length: 138 amino acids
Theoretical weight: 15.96 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LN63 (Residues: 1-160; Coverage: 86%)
Gene name: MRPL54
Sequence domains: Mitochondrial ribosomal protein L37
Mitochondrial ribosomal protein L57 Chain: Bt
Molecule details ›
Chain: Bt
Length: 102 amino acids
Theoretical weight: 12 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287BP93 (Residues: 1-102; Coverage: 100%)
Gene name: MRPL57
Sequence domains: Mitochondrial ribosome protein 63
Large ribosomal subunit protein mL62 Chain: Bu
Molecule details ›
Chain: Bu
Length: 205 amino acids
Theoretical weight: 23.55 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZJR2 (Residues: 1-205; Coverage: 100%)
Gene name: MRPL58
Sequence domains: RF-1 domain
Large ribosomal subunit protein mL64 Chain: Bv
Molecule details ›
Chain: Bv
Length: 222 amino acids
Theoretical weight: 25.82 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZXA6 (Residues: 1-222; Coverage: 100%)
Gene name: GADD45GIP1
Sequence domains: Growth arrest and DNA-damage-inducible proteins-interacting protein 1
39S ribosomal protein S30, mitochondrial Chain: Bw
Molecule details ›
Chain: Bw
Length: 433 amino acids
Theoretical weight: 49.1 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A480QIM3 (Residues: 1-433; Coverage: 100%)
Gene name: MRPS30
Sequence domains: Mitochondrial 28S ribosomal protein S30 (PDCD9)
Large ribosomal subunit protein bL28m Chain: B1
Molecule details ›
Chain: B1
Length: 256 amino acids
Theoretical weight: 30.15 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZTW8 (Residues: 1-256; Coverage: 100%)
Gene name: MRPL28
Sequence domains: Ribosomal L28 family
Mitochondrial ribosomal protein S18A Chain: Bx
Molecule details ›
Chain: Bx
Length: 196 amino acids
Theoretical weight: 22.27 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RRH6 (Residues: 9-25, 26-181; Coverage: 95%)
Gene name: MRPS18A
Sequence domains: Ribosomal protein S18
Mitochondrial ribosomal protein S2 Chain: AB
Molecule details ›
Chain: AB
Length: 289 amino acids
Theoretical weight: 31.73 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1S001 (Residues: 1-289; Coverage: 100%)
Gene name: MRPS2
Sequence domains: Ribosomal protein S2
28S ribosomal protein S24, mitochondrial Chain: AC
Molecule details ›
Chain: AC
Length: 167 amino acids
Theoretical weight: 18.94 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287ANU4 (Residues: 1-167; Coverage: 100%)
Gene name: MRPS24
Sequence domains: Mitochondrial ribosome subunit S24
Small ribosomal subunit protein uS5m Chain: AE
Molecule details ›
Chain: AE
Length: 430 amino acids
Theoretical weight: 48.21 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SU66 (Residues: 1-430; Coverage: 100%)
Gene name: MRPS5
Sequence domains:
bS6m Chain: AF
Molecule details ›
Chain: AF
Length: 276 amino acids
Theoretical weight: 30.37 KDa
Source organism: Sus scrofa
Small ribosomal subunit protein uS7m Chain: AG
Molecule details ›
Chain: AG
Length: 242 amino acids
Theoretical weight: 28.15 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZJ25 (Residues: 1-242; Coverage: 100%)
Gene name: MRPS7
Sequence domains: Ribosomal protein S7p/S5e
Mitochondrial ribosomal protein S9 Chain: AI
Molecule details ›
Chain: AI
Length: 397 amino acids
Theoretical weight: 45.6 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LU08 (Residues: 1-397; Coverage: 100%)
Gene name: MRPS9
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein uS10m Chain: AJ
Molecule details ›
Chain: AJ
Length: 200 amino acids
Theoretical weight: 23.11 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RUU2 (Residues: 1-200; Coverage: 100%)
Gene name: MRPS10
Sequence domains: Ribosomal protein S10p/S20e
Mitochondrial ribosomal protein S11 Chain: AK
Molecule details ›
Chain: AK
Length: 196 amino acids
Theoretical weight: 20.84 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZJJ6 (Residues: 1-196; Coverage: 100%)
Gene name: MRPS11
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS12m Chain: AL
Molecule details ›
Chain: AL
Length: 139 amino acids
Theoretical weight: 15.26 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0M3KL52 (Residues: 1-139; Coverage: 100%)
Sequence domains: Ribosomal protein S12/S23
28S ribosomal protein S14, mitochondrial Chain: AN
Molecule details ›
Chain: AN
Length: 128 amino acids
Theoretical weight: 15.12 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0M3KL53 (Residues: 1-128; Coverage: 100%)
Gene name: MRPS14
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS15m Chain: AO
Molecule details ›
Chain: AO
Length: 239 amino acids
Theoretical weight: 27.41 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287BMP0 (Residues: 1-266; Coverage: 90%)
Gene name: MRPS15
Sequence domains: Ribosomal protein S15
Small ribosomal subunit protein bS16m Chain: AP
Molecule details ›
Chain: AP
Length: 135 amino acids
Theoretical weight: 15.18 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A480JTD7 (Residues: 1-135; Coverage: 100%)
Sequence domains: Ribosomal protein S16
28S ribosomal protein S17, mitochondrial Chain: AQ
Molecule details ›
Chain: AQ
Length: 130 amino acids
Theoretical weight: 14.45 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D1UDM1 (Residues: 1-130; Coverage: 100%)
Gene name: MRPS17
Sequence domains: Ribosomal protein S17
28S ribosomal protein S18c, mitochondrial isoform 1 Chain: AR
Molecule details ›
Chain: AR
Length: 143 amino acids
Theoretical weight: 16.21 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0M3KL54 (Residues: 1-143; Coverage: 100%)
Gene name: MRPS18C
Sequence domains: Ribosomal protein S18
28S ribosomal protein S21, mitochondrial Chain: AU
Molecule details ›
Chain: AU
Length: 87 amino acids
Theoretical weight: 10.68 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZNB3 (Residues: 1-87; Coverage: 100%)
Gene name: MRPS21
Sequence domains: Ribosomal protein S21
unknown peptide Chain: AZ
Molecule details ›
Chain: AZ
Length: 18 amino acids
Theoretical weight: 1.3 KDa
Source organism: Sus scrofa
Mitochondrial ribosomal protein S22 Chain: Aa
Molecule details ›
Chain: Aa
Length: 382 amino acids
Theoretical weight: 43.23 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287AQT5 (Residues: 1-382; Coverage: 100%)
Gene name: MRPS22
Sequence domains: Mitochondrial 28S ribosomal protein S22
Small ribosomal subunit protein mS23 conserved domain-containing protein Chain: Ab
Molecule details ›
Chain: Ab
Length: 190 amino acids
Theoretical weight: 21.67 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287AEW3 (Residues: 17-207; Coverage: 91%)
Gene name: MRPS23
Sequence domains: Mitochondrial ribosomal protein S23
Small ribosomal subunit protein mS25 Chain: Ac
Molecule details ›
Chain: Ac
Length: 173 amino acids
Theoretical weight: 19.95 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0M3KL55 (Residues: 1-173; Coverage: 100%)
Gene name: MRPS25
Sequence domains: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Progonadoliberin Chain: Ad
Molecule details ›
Chain: Ad
Length: 205 amino acids
Theoretical weight: 23.64 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287AY01 (Residues: 54-77; Coverage: 22%)
Gene name: GNRH2
28S ribosomal protein S27, mitochondrial Chain: Ae
Molecule details ›
Chain: Ae
Length: 426 amino acids
Theoretical weight: 49.02 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LK09 (Residues: 41-466; Coverage: 91%)
Gene name: MRPS27
Sequence domains: Mitochondrial 28S ribosomal protein S27
Mitochondrial ribosomal protein S28 Chain: Af
Molecule details ›
Chain: Af
Length: 188 amino acids
Theoretical weight: 21.01 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A0M3KL56 (Residues: 1-188; Coverage: 100%)
Gene name: MRPS28
Sequence domains: Mitochondrial ribosomal protein MRP-S35
Large ribosomal subunit protein uL29m Chain: B2
Molecule details ›
Chain: B2
Length: 252 amino acids
Theoretical weight: 30.09 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SGC7 (Residues: 1-32, 33-250; Coverage: 100%)
Gene name: MRPL47
Sequence domains: Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Small ribosomal subunit protein mS29 Chain: Ag
Molecule details ›
Chain: Ag
Length: 410 amino acids
Theoretical weight: 46.97 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D1XNL0 (Residues: 1-410; Coverage: 100%)
Gene name: DAP3
Sequence domains: Mitochondrial ribosomal death-associated protein 3
Small ribosomal subunit protein mS31 Chain: Ah
Molecule details ›
Chain: Ah
Length: 387 amino acids
Theoretical weight: 44.09 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RME2 (Residues: 1-179, 180-180, 181-232, 233-381; Coverage: 100%)
Gene name: MRPS31
Sequence domains: Mitochondrial 28S ribosomal protein S31
Small ribosomal subunit protein mS33 Chain: Ai
Molecule details ›
Chain: Ai
Length: 106 amino acids
Theoretical weight: 12.54 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1V2H3 (Residues: 43-148; Coverage: 72%)
Gene name: MRPS33
Sequence domains: Mitochondrial ribosomal subunit S27
Mitochondrial ribosomal protein S34 Chain: Aj
Molecule details ›
Chain: Aj
Length: 218 amino acids
Theoretical weight: 25.84 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287AVS9 (Residues: 288-505; Coverage: 43%)
Gene name: MRPS34
Sequence domains: Mitochondrial 28S ribosomal protein S34
Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein Chain: Ak
Molecule details ›
Chain: Ak
Length: 325 amino acids
Theoretical weight: 37.1 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SG95 (Residues: 42-366; Coverage: 89%)
Gene name: MRPS35
Sequence domains: Mitochondrial ribosomal subunit protein
CHCH domain-containing protein Chain: Am
Molecule details ›
Chain: Am
Length: 118 amino acids
Theoretical weight: 13.56 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1SZV4 (Residues: 1-118; Coverage: 100%)
Gene name: CHCHD1
Sequence domains: CHCH domain
Small ribosomal subunit protein mS38 Chain: An
Molecule details ›
Chain: An
Length: 199 amino acids
Theoretical weight: 22.84 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D2A802 (Residues: 1-199; Coverage: 100%)
Gene name: AURKAIP1
Sequence domains: Mitochondrial mRNA-processing protein COX24, C-terminal
Small ribosomal subunit protein mS39 Chain: Ao
Molecule details ›
Chain: Ao
Length: 699 amino acids
Theoretical weight: 79.34 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: K7GKS8 (Residues: 1-517, 518-546, 547-690; Coverage: 100%)
Gene name: PTCD3
Sequence domains: Pentatricopeptide repeat domain
Small ribosomal subunit protein mS40 Chain: Ap
Molecule details ›
Chain: Ap
Length: 258 amino acids
Theoretical weight: 29.22 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: Q767K8 (Residues: 1-258; Coverage: 100%)
Gene name: MRPS18B
Sequence domains: Ribosomal protein S18
39S ribosomal protein L12, mitochondrial Chains: CL, DL, EL, FL, GL, HL, LL
Molecule details ›
Chains: CL, DL, EL, FL, GL, HL, LL
Length: 198 amino acids
Theoretical weight: 21.27 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1U6S6 (Residues: 1-198; Coverage: 100%)
Gene name: MRPL12
Sequence domains:
Large ribosomal subunit protein uL30m Chain: B3
Molecule details ›
Chain: B3
Length: 161 amino acids
Theoretical weight: 18.92 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A8D1MIP3 (Residues: 1-161; Coverage: 100%)
Gene name: MRPL30
Sequence domains: Ribosomal protein L30p/L7e
Mitochondrial ribosomal protein L55 Chain: B4
Molecule details ›
Chain: B4
Length: 126 amino acids
Theoretical weight: 15.16 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1ULI6 (Residues: 1-126; Coverage: 100%)
Gene name: MRPL55
Sequence domains: Mitochondrial ribosomal protein L55
Large ribosomal subunit protein bL32m Chain: B5
Molecule details ›
Chain: B5
Length: 188 amino acids
Theoretical weight: 21.54 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LTC4 (Residues: 20-207; Coverage: 91%)
Gene name: MRPL32
Sequence domains: Ribosomal L32p protein family
Large ribosomal subunit protein bL33m Chain: B6
Molecule details ›
Chain: B6
Length: 65 amino acids
Theoretical weight: 7.51 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1TLP9 (Residues: 1-65; Coverage: 100%)
Gene name: MRPL33
Sequence domains: Ribosomal protein L33
Large ribosomal subunit protein bL34m Chain: B7
Molecule details ›
Chain: B7
Length: 95 amino acids
Theoretical weight: 10.87 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A4X1UFR4 (Residues: 1-95; Coverage: 100%)
Gene name: MRPL34
Sequence domains: Ribosomal protein L34
Large ribosomal subunit protein bL35m Chain: B8
Molecule details ›
Chain: B8
Length: 188 amino acids
Theoretical weight: 21.55 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1SVC5 (Residues: 1-79; Coverage: 83%)
Gene name: MRPL35
Ribosomal protein Chain: B9
Molecule details ›
Chain: B9
Length: 100 amino acids
Theoretical weight: 10.84 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287A731 (Residues: 1-100; Coverage: 100%)
Gene name: MRPL36
Sequence domains: Ribosomal protein L36
Elongation factor G, mitochondrial Chain: BC
Molecule details ›
Chain: BC
Length: 722 amino acids
Theoretical weight: 80.14 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96RP9 (Residues: 37-751; Coverage: 95%)
Gene names: EFG, EFG1, GFM, GFM1
Sequence domains:
Large ribosomal subunit protein uL2 RNA-binding domain-containing protein Chain: BD
Molecule details ›
Chain: BD
Length: 306 amino acids
Theoretical weight: 33.27 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RRN2 (Residues: 1-216; Coverage: 96%)
Gene name: MRPL2
Sequence domains: Ribosomal Proteins L2, RNA binding domain
Large ribosomal subunit protein uL3m Chain: BE
Molecule details ›
Chain: BE
Length: 348 amino acids
Theoretical weight: 38.43 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A140UHW4 (Residues: 52-399; Coverage: 87%)
Gene name: MRPL3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4m Chain: BF
Molecule details ›
Chain: BF
Length: 294 amino acids
Theoretical weight: 33.25 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287B9C4 (Residues: 1-250; Coverage: 92%)
Gene name: MRPL4
Sequence domains: Ribosomal protein L4/L1 family
Large ribosomal subunit protein bL9m Chain: BI
Molecule details ›
Chain: BI
Length: 268 amino acids
Theoretical weight: 30.37 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LR45 (Residues: 1-268; Coverage: 100%)
Gene name: MRPL9
Sequence domains: Ribosomal protein L9, N-terminal domain
Large ribosomal subunit protein uL10m Chain: BJ
Molecule details ›
Chain: BJ
Length: 262 amino acids
Theoretical weight: 29.45 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RWJ0 (Residues: 10-257; Coverage: 97%)
Gene name: MRPL10
Sequence domains: Ribosomal protein L10
Large ribosomal subunit protein uL11m Chain: BK
Molecule details ›
Chain: BK
Length: 192 amino acids
Theoretical weight: 20.81 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RU54 (Residues: 1-41, 42-160; Coverage: 100%)
Gene name: MRPL11
Sequence domains: Ribosomal protein L11, RNA binding domain
Mitochondrial ribosomal protein L13 Chain: BN
Molecule details ›
Chain: BN
Length: 178 amino acids
Theoretical weight: 20.63 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: K7GP19 (Residues: 20-197; Coverage: 90%)
Gene name: MRPL13
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL14m Chain: BO
Molecule details ›
Chain: BO
Length: 145 amino acids
Theoretical weight: 15.96 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A287BMZ6 (Residues: 181-325; Coverage: 45%)
Gene name: MRPL14
Sequence domains: Ribosomal protein L14p/L23e
uL15m Chain: BP
Molecule details ›
Chain: BP
Length: 296 amino acids
Theoretical weight: 33.48 KDa
Source organism: Sus scrofa
Large ribosomal subunit protein uL16m Chain: BQ
Molecule details ›
Chain: BQ
Length: 251 amino acids
Theoretical weight: 28.68 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RI89 (Residues: 1-251; Coverage: 100%)
Gene name: MRPL16
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein bL17m Chain: BR
Molecule details ›
Chain: BR
Length: 169 amino acids
Theoretical weight: 19.27 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: F1RMQ4 (Residues: 1-169; Coverage: 100%)
Gene name: MRPL17
Sequence domains: Ribosomal protein L17
Mitochondrial ribosomal protein L18 Chain: BS
Molecule details ›
Chain: BS
Length: 180 amino acids
Theoretical weight: 20.58 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: A0A286ZNK1 (Residues: 26-166; Coverage: 80%)
Gene name: MRPL18
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Large ribosomal subunit protein bL19m Chain: BT
Molecule details ›
Chain: BT
Length: 292 amino acids
Theoretical weight: 33.44 KDa
Source organism: Sus scrofa
UniProt:
  • Canonical: I3LNJ0 (Residues: 12-303; Coverage: 96%)
Gene name: MRPL19
Sequence domains: Ribosomal protein L19
12S rRNA Chains: AA, BA
Molecule details ›
Chains: AA, BA
Length: 16770 nucleotides
Theoretical weight: 5350.87 KDa
Sequence domains:
  • tRNA
  • Bacterial small subunit ribosomal RNA
  • Bacterial large subunit ribosomal RNA
    • fMet-tRNAMet (P site) Chain: AV
    Molecule details ›
    Chain: AV
    Length: 71 nucleotides
    Theoretical weight: 22.66 KDa
    Messenger RNA Chain: AX
    Molecule details ›
    Chain: AX
    Length: 6 nucleotides
    Theoretical weight: 1.89 KDa
    CP tRNAPhe Chain: BB
    Molecule details ›
    Chain: BB
    Length: 73 nucleotides
    Theoretical weight: 23.4 KDa
    Sequence domains: tRNA

    Ligands and Environments

    7 bound ligands:
    Ligand MG 326 x MG
    Ligand ZN 6 x ZN
    Ligand SPM 3 x SPM
    Ligand FME 1 x FME
    Ligand GTP 1 x GTP
    Ligand 5GP 2 x 5GP
    Ligand GNP 1 x GNP
    No modified residues

    Experiments and Validation Details

    Entry percentile scores
    Resolution: 3Å
    Relevant EMDB volumes: EMD-10778
    Expression system: Escherichia coli

    Quick links

    Citations

    4 review citations

    The Structural Dynamics of Translation.
    Korostelev AA. (2022)
    3 more

    1 mention without citation

    Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors.
    Nadler et al. (2022)