› 6zps

X-ray diffraction
1.8Å resolution

Structure of Unliganded MgGH51 a-L-Arabinofuranosidase Crystal Type 3 Collected at 2.75 A

Released:
DOI: 10.2210/pdb6zps/pdb
PDB entry 6zps coloured by chain, front view.
PDB entry 6zps coloured by chain, side view.
PDB entry 6zps coloured by chain, top view.
Source organism: Meripilus giganteus
Primary publication:
Structure of a GH51 α-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi.
McGregor NGS, Turkenburg JP, Mørkeberg Krogh KBR, Nielsen JE, Artola M, Stubbs KA, Overkleeft HS, Davies GJ
Acta Crystallogr D Struct Biol 76 1124-1133 (2020)
PMID: 33135683

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-167952 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (4 distinct):
MgGH51 Chain: AAA
Molecule details ›
Chain: AAA
Length: 627 amino acids
Theoretical weight: 67.69 KDa
Source organism: Meripilus giganteus
Expression system: Aspergillus oryzae

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
4 bound ligands:
Ligand GOL 1 x GOL
Ligand ACT 2 x ACT
Ligand SO4 13 x SO4
Ligand CL 17 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I23
Spacegroup: P43212
Unit cell:
a: 84.171Å b: 84.171Å c: 257.347Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.145 0.144 0.178
Expression system: Aspergillus oryzae

Quick links

Citations

1 review citation

The chemistry and biology of natural ribomimetics and related compounds.
Tsunoda et al. (2022)
1 other article

2 mentions without citation

Structure of a GH51 α-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi.
McGregor et al. (2020)
1 more