› 6zpy

X-ray diffraction
1.27Å resolution

Structure of Arabinose-Bound MgGH51 a-L-Arabinofuranosidase Crystal Type 1

Released:
DOI: 10.2210/pdb6zpy/pdb
PDB entry 6zpy coloured by chain, front view.
PDB entry 6zpy coloured by chain, side view.
PDB entry 6zpy coloured by chain, top view.
Source organism: Meripilus giganteus
Primary publication:
Structure of a GH51 α-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi.
McGregor NGS, Turkenburg JP, Mørkeberg Krogh KBR, Nielsen JE, Artola M, Stubbs KA, Overkleeft HS, Davies GJ
Acta Crystallogr D Struct Biol 76 1124-1133 (2020)
PMID: 33135683

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-167956 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
MgGH51 Chain: AAA
Molecule details ›
Chain: AAA
Length: 627 amino acids
Theoretical weight: 67.69 KDa
Source organism: Meripilus giganteus
Expression system: Aspergillus oryzae

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
3 bound ligands:
Ligand AHR 1 x AHR
Ligand NO3 4 x NO3
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P212121
Unit cell:
a: 59.708Å b: 65.043Å c: 174.122Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.141 0.139 0.179
Expression system: Aspergillus oryzae

Quick links

Citations

4 mentions without citation

The chemistry and biology of natural ribomimetics and related compounds.
Tsunoda et al. (2022)
3 more