6zu5

Electron Microscopy
2.9Å resolution

Structure of the Paranosema locustae ribosome in complex with Lso2

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 74-mer (preferred)
PDBe Complex ID:
PDB-CPX-167963 (preferred)
Entry contents:
71 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (74 distinct):
uL2 Chain: LA0
Molecule details ›
Chain: LA0
Length: 247 amino acids
Theoretical weight: 26.69 KDa
Source organism: Paranosema locustae
uL15 Chain: LAA
Molecule details ›
Chain: LAA
Length: 155 amino acids
Theoretical weight: 17.53 KDa
Source organism: Paranosema locustae
uL3 Chain: LB0
Molecule details ›
Chain: LB0
Length: 385 amino acids
Theoretical weight: 43.6 KDa
Source organism: Paranosema locustae
eL29 Chain: LBB
Molecule details ›
Chain: LBB
Length: 64 amino acids
Theoretical weight: 7.62 KDa
Source organism: Paranosema locustae
uL4 Chain: LC0
Molecule details ›
Chain: LC0
Length: 330 amino acids
Theoretical weight: 37.11 KDa
Source organism: Paranosema locustae
eL30 Chain: LCC
Molecule details ›
Chain: LCC
Length: 108 amino acids
Theoretical weight: 11.82 KDa
Source organism: Paranosema locustae
uL18 Chain: LD0
Molecule details ›
Chain: LD0
Length: 266 amino acids
Theoretical weight: 31.08 KDa
Source organism: Paranosema locustae
eL31 Chain: LDD
Molecule details ›
Chain: LDD
Length: 109 amino acids
Theoretical weight: 12.77 KDa
Source organism: Paranosema locustae
eL6 Chain: LE0
Molecule details ›
Chain: LE0
Length: 180 amino acids
Theoretical weight: 20.55 KDa
Source organism: Paranosema locustae
eL32 Chain: LEE
Molecule details ›
Chain: LEE
Length: 132 amino acids
Theoretical weight: 15.61 KDa
Source organism: Paranosema locustae
uL30 Chain: LF0
Molecule details ›
Chain: LF0
Length: 254 amino acids
Theoretical weight: 30.09 KDa
Source organism: Paranosema locustae
eL33 Chain: LFF
Molecule details ›
Chain: LFF
Length: 108 amino acids
Theoretical weight: 12.31 KDa
Source organism: Paranosema locustae
eL8 Chain: LG0
Molecule details ›
Chain: LG0
Length: 216 amino acids
Theoretical weight: 24.88 KDa
Source organism: Paranosema locustae
eL34 Chain: LGG
Molecule details ›
Chain: LGG
Length: 113 amino acids
Theoretical weight: 12.88 KDa
Source organism: Paranosema locustae
uL6 Chain: LH0
Molecule details ›
Chain: LH0
Length: 186 amino acids
Theoretical weight: 21.07 KDa
Source organism: Paranosema locustae
uL29 Chain: LHH
Molecule details ›
Chain: LHH
Length: 126 amino acids
Theoretical weight: 15.35 KDa
Source organism: Paranosema locustae
uL16 Chain: LI0
Molecule details ›
Chain: LI0
Length: 218 amino acids
Theoretical weight: 24.8 KDa
Source organism: Paranosema locustae
eL36 Chain: LII
Molecule details ›
Chain: LII
Length: 98 amino acids
Theoretical weight: 11.43 KDa
Source organism: Paranosema locustae
uL5 Chain: LJ0
Molecule details ›
Chain: LJ0
Length: 174 amino acids
Theoretical weight: 19.82 KDa
Source organism: Paranosema locustae
eL37 Chain: LJJ
Molecule details ›
Chain: LJJ
Length: 95 amino acids
Theoretical weight: 10.79 KDa
Source organism: Paranosema locustae
eL13 Chain: LL0
Molecule details ›
Chain: LL0
Length: 166 amino acids
Theoretical weight: 19.55 KDa
Source organism: Paranosema locustae
eL39 Chain: LLL
Molecule details ›
Chain: LLL
Length: 51 amino acids
Theoretical weight: 6.47 KDa
Source organism: Paranosema locustae
eL14 Chain: LM0
Molecule details ›
Chain: LM0
Length: 108 amino acids
Theoretical weight: 12.68 KDa
Source organism: Paranosema locustae
eL40 Chain: LMM
Molecule details ›
Chain: LMM
Length: 132 amino acids
Theoretical weight: 14.5 KDa
Source organism: Paranosema locustae
eL15 Chain: LN0
Molecule details ›
Chain: LN0
Length: 204 amino acids
Theoretical weight: 23.67 KDa
Source organism: Paranosema locustae
Lso2 Chain: LNN
Molecule details ›
Chain: LNN
Length: 77 amino acids
Theoretical weight: 9.42 KDa
Source organism: Paranosema locustae
uL13 Chain: LO0
Molecule details ›
Chain: LO0
Length: 198 amino acids
Theoretical weight: 23.12 KDa
Source organism: Paranosema locustae
eL42 Chain: LOO
Molecule details ›
Chain: LOO
Length: 112 amino acids
Theoretical weight: 13.24 KDa
Source organism: Paranosema locustae
uL22 Chain: LP0
Molecule details ›
Chain: LP0
Length: 171 amino acids
Theoretical weight: 19.49 KDa
Source organism: Paranosema locustae
eL43 Chain: LPP
Molecule details ›
Chain: LPP
Length: 86 amino acids
Theoretical weight: 9.21 KDa
Source organism: Paranosema locustae
eL18 Chain: LQ0
Molecule details ›
Chain: LQ0
Length: 178 amino acids
Theoretical weight: 20.02 KDa
Source organism: Paranosema locustae
eL19 Chain: LR0
Molecule details ›
Chain: LR0
Length: 166 amino acids
Theoretical weight: 19.52 KDa
Source organism: Paranosema locustae
eL20 Chain: LS0
Molecule details ›
Chain: LS0
Length: 175 amino acids
Theoretical weight: 20.86 KDa
Source organism: Paranosema locustae
eL21 Chain: LT0
Molecule details ›
Chain: LT0
Length: 160 amino acids
Theoretical weight: 18.69 KDa
Source organism: Paranosema locustae
eL22 Chain: LU0
Molecule details ›
Chain: LU0
Length: 114 amino acids
Theoretical weight: 13.25 KDa
Source organism: Paranosema locustae
uL14 Chain: LV0
Molecule details ›
Chain: LV0
Length: 140 amino acids
Theoretical weight: 15.26 KDa
Source organism: Paranosema locustae
eL24 Chain: LW0
Molecule details ›
Chain: LW0
Length: 133 amino acids
Theoretical weight: 15.21 KDa
Source organism: Paranosema locustae
uL23 Chain: LX0
Molecule details ›
Chain: LX0
Length: 106 amino acids
Theoretical weight: 11.87 KDa
Source organism: Paranosema locustae
uL24 Chain: LY0
Molecule details ›
Chain: LY0
Length: 140 amino acids
Theoretical weight: 16.62 KDa
Source organism: Paranosema locustae
eL27 Chain: LZ0
Molecule details ›
Chain: LZ0
Length: 127 amino acids
Theoretical weight: 14.29 KDa
Source organism: Paranosema locustae
uS2 Chain: SA0
Molecule details ›
Chain: SA0
Length: 242 amino acids
Theoretical weight: 27.34 KDa
Source organism: Paranosema locustae
eS26 Chain: SAA
Molecule details ›
Chain: SAA
Length: 104 amino acids
Theoretical weight: 11.99 KDa
Source organism: Paranosema locustae
eS1 Chain: SB0
Molecule details ›
Chain: SB0
Length: 230 amino acids
Theoretical weight: 26.21 KDa
Source organism: Paranosema locustae
eS27 Chain: SBB
Molecule details ›
Chain: SBB
Length: 86 amino acids
Theoretical weight: 9.92 KDa
Source organism: Paranosema locustae
uS5 Chain: SC0
Molecule details ›
Chain: SC0
Length: 255 amino acids
Theoretical weight: 28.25 KDa
Source organism: Paranosema locustae
eS28 Chain: SCC
Molecule details ›
Chain: SCC
Length: 65 amino acids
Theoretical weight: 7.33 KDa
Source organism: Paranosema locustae
uS3 Chain: SD0
Molecule details ›
Chain: SD0
Length: 217 amino acids
Theoretical weight: 24.68 KDa
Source organism: Paranosema locustae
uS14 Chain: SDD
Molecule details ›
Chain: SDD
Length: 63 amino acids
Theoretical weight: 7.48 KDa
Source organism: Paranosema locustae
eS4 Chain: SE0
Molecule details ›
Chain: SE0
Length: 267 amino acids
Theoretical weight: 30.01 KDa
Source organism: Paranosema locustae
eS30 Chain: SEE
Molecule details ›
Chain: SEE
Length: 60 amino acids
Theoretical weight: 7.01 KDa
Source organism: Paranosema locustae
uS7 Chain: SF0
Molecule details ›
Chain: SF0
Length: 195 amino acids
Theoretical weight: 21.63 KDa
Source organism: Paranosema locustae
eS6 Chain: SG0
Molecule details ›
Chain: SG0
Length: 222 amino acids
Theoretical weight: 25.83 KDa
Source organism: Paranosema locustae
RACK1 Chain: SGG
Molecule details ›
Chain: SGG
Length: 330 amino acids
Theoretical weight: 35.51 KDa
Source organism: Paranosema locustae
eS7 Chain: SH0
Molecule details ›
Chain: SH0
Length: 176 amino acids
Theoretical weight: 20.21 KDa
Source organism: Paranosema locustae
eS8 Chain: SI0
Molecule details ›
Chain: SI0
Length: 175 amino acids
Theoretical weight: 20.07 KDa
Source organism: Paranosema locustae
uS4 Chain: SJ0
Molecule details ›
Chain: SJ0
Length: 187 amino acids
Theoretical weight: 21.7 KDa
Source organism: Paranosema locustae
eS10 Chain: SK0
Molecule details ›
Chain: SK0
Length: 102 amino acids
Theoretical weight: 11.6 KDa
Source organism: Paranosema locustae
uS17 Chain: SL0
Molecule details ›
Chain: SL0
Length: 160 amino acids
Theoretical weight: 18.74 KDa
Source organism: Paranosema locustae
uS15 Chain: SN0
Molecule details ›
Chain: SN0
Length: 146 amino acids
Theoretical weight: 16.64 KDa
Source organism: Paranosema locustae
uS11 Chain: SO0
Molecule details ›
Chain: SO0
Length: 135 amino acids
Theoretical weight: 14.35 KDa
Source organism: Paranosema locustae
uS19 Chain: SP0
Molecule details ›
Chain: SP0
Length: 146 amino acids
Theoretical weight: 16.54 KDa
Source organism: Paranosema locustae
uS9 Chain: SQ0
Molecule details ›
Chain: SQ0
Length: 145 amino acids
Theoretical weight: 16.5 KDa
Source organism: Paranosema locustae
eS17 Chain: SR0
Molecule details ›
Chain: SR0
Length: 123 amino acids
Theoretical weight: 14.7 KDa
Source organism: Paranosema locustae
uS13 Chain: SS0
Molecule details ›
Chain: SS0
Length: 161 amino acids
Theoretical weight: 18.09 KDa
Source organism: Paranosema locustae
eS19 Chain: ST0
Molecule details ›
Chain: ST0
Length: 141 amino acids
Theoretical weight: 16.19 KDa
Source organism: Paranosema locustae
uS10 Chain: SU0
Molecule details ›
Chain: SU0
Length: 111 amino acids
Theoretical weight: 12.7 KDa
Source organism: Paranosema locustae
eS21 Chain: SV0
Molecule details ›
Chain: SV0
Length: 66 amino acids
Theoretical weight: 7.38 KDa
Source organism: Paranosema locustae
uS8 Chain: SW0
Molecule details ›
Chain: SW0
Length: 127 amino acids
Theoretical weight: 14.37 KDa
Source organism: Paranosema locustae
uS12 Chain: SX0
Molecule details ›
Chain: SX0
Length: 140 amino acids
Theoretical weight: 15.79 KDa
Source organism: Paranosema locustae
eS24 Chain: SY0
Molecule details ›
Chain: SY0
Length: 133 amino acids
Theoretical weight: 15.87 KDa
Source organism: Paranosema locustae
eS25 Chain: SZ0
Molecule details ›
Chain: SZ0
Length: 126 amino acids
Theoretical weight: 13.72 KDa
Source organism: Paranosema locustae
25S ribosomal RNA Chain: L50
Molecule details ›
Chain: L50
Length: 2639 nucleotides
Theoretical weight: 854.38 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5S ribosomal RNA Chain: L70
Molecule details ›
Chain: L70
Length: 119 nucleotides
Theoretical weight: 38.43 KDa
Sequence domains: 5S ribosomal RNA
18S Ribosomal RNA Chain: S60
Molecule details ›
Chain: S60
Length: 1400 nucleotides
Theoretical weight: 456.97 KDa
Sequence domains: Microsporidia small subunit ribosomal RNA

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-11437