EMDB (the Electron Microscopy Data Bank) is a public repository for electron cryo-microscopy maps and tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, sub-tomogram averaging, fibre diffraction and electron crystallography. More...
As of 13 March 2024, EMDB contains 33946 entries (latest entries, trends).
EMDB News
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06 January 2024: We are delighted to share that EMDB has officially been elevated to a Core Data Resource by ELIXIR, recognising it as a European data resource of fundamental importance to the wider life-science community and the long-term preservation of biological data.
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22 November 2023: We are happy to share the most recent version of the EMDB Nucleic Acids Research paper. The paper describes recent developments and future plans of the EMDB in the context of the worldwide Protein Data Bank. Check it out now! https://doi.org/10.1093/nar/gkad1019
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(Show all)Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT1 conformation
Domoate-bound GluK2 kainate receptor in partially-open conformation 1
Structure of the Arabidopsis E529Q/E1174Q ABCB19 in the ATP bound state
Flexible reconstruction of CBF1-CCAN bound to a centromeric CENP-A nucleosome (EMPIAR-11910)
Plastid-encoded RNA polymerase transcription elongation complex (PAP2-mRNA)
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with PSI-6206
Plastid-encoded RNA polymerase transcription elongation complex (Region 3)
Cryo-EM structure of CasJ19-crRNA-DNA complex at 3.1 Angstroms resolution, Conformation 1
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-INT1 conformation
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class C2
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #028
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #030
MAP7 MTBD (microtubule binding domain) decorated Taxol stabilized microtubule (13pf) protofilament
Cryo-ET 3D reconstruction of an individual tetra-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #154
Cryo-EM structure of the cross-linked HSP90 dimer (NTD-MD) in the semi-open state
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Ribavirin
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with N-hydroxycytidine
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-INT3 conformation
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, C16S, C20S, C870S, T1279C mutant
MAP7 MTBD (microtubule binding domain) decorated microtubule protofilament
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP78 Class C3
CryoEM structure of Kappa Opioid Receptor bound to a semi-peptide and Gi1
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Structure of HamB-DNA complex, conformation 2, from the Escherichia coli Hachiman defense system
Plastid-encoded RNA polymerase transcription elongation complex (Region 2)
Cryo-ET 3D reconstruction of an individual tri-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #117
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class C1
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP78 Class C2
Cryo-electron tomogram of lift-out lamella from cell-derived extracellular matrix (example 2)
Cryo-EM structure of Cas7217-crRNA complex at 3.2 Angstroms resolution
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, consensus reconstruction
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:Pomalidomide:SD40
Plastid-encoded RNA polymerase transcription elongation complex (consensus map)
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP78 Class B
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-OFS conformation
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #024
Structure of the auto-fluorescent membrane-bound red body organelle from Nannochloropsis oceanica in situ
Plastid-encoded RNA polymerase transcription elongation complex (Region 1)
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #021
Local map of SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-S21B10
Cryo-EM structure of E3 ubiquitin ligase Doa10 from Saccharomyces cerevisiae
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-INT1-INT3 (clockwise) conformation
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 1
Cryo-electron tomogram of lift-out lamella from cell-derived extracellular matrix (example 3)
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT1-INT1-INT1 conformation
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class D1
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in MSP2N2 nanodiscs, apo state
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-OFS conformation
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (from ensemble analysis)
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation
Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)
Cryo-electron tomogram of lift-out lamella from cell-derived extracellular matrix (example 5)
Cryo-EM structure of the HSP90 dimer (NTD-MD) in the semi-open state
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT1-INT1 conformation
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #026
Cryo-ET 3D reconstruction of an individual tri-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #113
Acinetobacter baumannii 118362 family 2A cargo-loaded encapsulin shell
Cryo-ET 3D reconstruction of an individual tetra-nucleosome-H1 particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #222
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (3DVA analysis)
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT1 conformation
Cryo-ET 3D reconstruction of an individual tri-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #116
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, subset reconstruction
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP45 Class C2
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT1 conformation
Structure of HamB-DNA complex, conformation 1, from the Escherichia coli Hachiman defense system
Cryo-EM structure of Cas0740-crRNA-DNAcomplex at 3.3 Angstroms resolution
Cryo-EM structure of Cas1317-crRNA complex at 2.9 Angstroms resolution
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT3 conformation
Cryo-EM structure of Cas7217-crRNA-DNA complex at 3.1 Angstroms resolution
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C2)
Flexible reconstruction of the yeast inner kinetochore bound to a CENP-A nucleosome (EMPIAR-11890)
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class D2
Cryo-electron tomogram of lift-out lamella from cell-derived extracellular matrix (example 1)
Structure of HamA(E138A,K140A)B-plasmid DNA complex from the Escherichia coli Hachiman defense system
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #029
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP45 Class E1
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class C3
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #022
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-INT1-INT3 (counterclockwise) conformation
SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-S21B10
Domote-bound GluK2 kainate receptors in partially-open conformation 2
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #025
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT3 conformation
Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U12 snRNP part
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #023
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Flexible reconstruction of the yeast U4/U6.U5 tri-snRNP (EMPIAR-10073) using DynaMight
Overall map of SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-S21B10
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP45 Class G
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP78 Class C1
Cryo-ET 3D reconstruction of an individual tetra-nucleosome-H1 particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #223
Cryo-EM structure of CasJ19-crRNA-DNA complex at 3.1 Angstroms resolution, Conformation 2
Structure of the wild-type Arabidopsis ABCB19 in the brassinolide and AMP-PNP bound state
Structure of HamAB apo complex from the Escherichia coli Hachiman defense system
Cryo-electron tomogram of lift-out lamella from cell-derived extracellular matrix (example 4)
Cryo-EM structure of the Anaphase-promoting complex/cyclosome (APC/C) bound to co-activator Cdh1 at 3.2 Angstrom resolution
Escherichia coli paused disome complex (Non-rotated disome interface class 1)
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class C4
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Cryo-ET 3D reconstruction of an individual mono-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #027
Cryo-EM structure of the RAF1-HSP90-CDC37 complex in the closed state
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K567W K2008W mutant
Flexible reconstruction of a pre-catalytic spliceosome (EMPIAR-10180) using DynaMight
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C1)
Structure of the wild-type Arabidopsis ABCB19 in the brassinolide-bound state
Cryo-ET 3D reconstruction of an individual tri-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #115
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class B
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 2
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, consensus reconstruction
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP45 Class E2
Cryo-ET 3D reconstruction of an individual tri-nucleosome particle in 5 mM NaCl and 20 mM HEPES buffer --- Particle #114
Plastid-encoded RNA polymerase transcription elongation complex (Region 4)
Domoate-bound GluK2 kainate receptor in partially-open conformation 3
Structure of Circularly Permuted 50S Ribosomal Subunit Assembly Intermediate - CP63(+PS) Class E
MAP7 MTBD (microtubule binding domain) decorated Taxol stabilized microtubule (14pf) protofilament
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, consensus reconstruction
Cryo-EM structure of Cas1317-crRNA-DNA complex at 3.2 Angstroms resolution