› 183d

X-ray diffraction
1.6Å resolution

X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE

Released:
DOI: 10.2210/pdb183d/pdb
PDB entry 183d coloured by chain, front view.
PDB entry 183d coloured by chain, side view.
PDB entry 183d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine.
Lipscomb LA, Peek ME, Morningstar ML, Verghis SM, Miller EM, Rich A, Essigmann JM, Williams LD
Proc Natl Acad Sci U S A 92 719-23 (1995)
PMID: 7846041

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113361 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*CP*AP*(8OG)P*CP*GP*CP*TP*GP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.06 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand 8OG 1 x 8OG

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: C2
Unit cell:
a: 32.27Å b: 25.56Å c: 34.71Å
α: 90° β: 115.77° γ: 90°
R-values:
R R work R free
0.234 0.234 not available
Expression system: Not provided

Quick links

Citations

25 review citations

The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases.
McCulloch et al. (2008)
24 more

11 mentions without citation

Searching for DNA Damage: Insights From Single Molecule Analysis.
Schaich et al. (2021)
10 more