› 1a9g

Solution NMR

APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND N3 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE

Released:
DOI: 10.2210/pdb1a9g/pdb
PDB entry 1a9g coloured by chain, front view.
PDB entry 1a9g coloured by chain, side view.
PDB entry 1a9g coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structures of apurinic and apyrimidinic sites in duplex DNAs.
Beger RD, Bolton PH
J Biol Chem 273 15565-73 (1998)
PMID: 9624147

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113403 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 11 nucleotides
Theoretical weight: 3.21 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') Chain: B
Molecule details ›
Chain: B
Length: 11 nucleotides
Theoretical weight: 3.37 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: matrix relaxation
Expression system: Not provided

Quick links

Citations

2 review citations

Chemistry and structural biology of DNA damage and biological consequences.
Stone et al. (2011)
1 more

1 mention without citation

Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.
Biedermannová et al. (2022)