› 1ac7

Solution NMR

STRUCTURAL FEATURES OF THE DNA HAIRPIN D(ATCCTAGTTATAGGAT): THE FORMATION OF A G-A BASE PAIR IN THE LOOP, NMR, 10 STRUCTURES

Released:
DOI: 10.2210/pdb1ac7/pdb
PDB entry 1ac7 coloured by chain, ensemble of 10 models, front view.
PDB entry 1ac7 coloured by chain, ensemble of 10 models, side view.
PDB entry 1ac7 coloured by chain, ensemble of 10 models, top view.
Source organism: Synthetic construct
Primary publication:
Structural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): formation of a G-A base pair in the loop.
van Dongen MJ, Mooren MM, Willems EF, van der Marel GA, van Boom JH, Wijmenga SS, Hilbers CW
Nucleic Acids Res 25 1537-47 (1997)
PMID: 9092659

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113409 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*AP*TP*CP*CP*TP*AP*GP*TP*TP*AP*TP*AP*GP*GP*AP*T)-3') Chain: A
Molecule details ›
Chain: A
Length: 16 nucleotides
Theoretical weight: 4.91 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: DISTANCE GEOMETRY, RESTRAINED MOLECULAR DYNAMICS
Expression system: Not provided

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Citations

1 review citation

Transition state variation in enzymatic reactions.
Schramm VL. (2001)
20 other articles

7 mentions without citation

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors.
Jeddi et al. (2017)
6 more