› 1aul

Solution NMR

SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE

Released:
DOI: 10.2210/pdb1aul/pdb
PDB entry 1aul coloured by chain, front view.
PDB entry 1aul coloured by chain, side view.
PDB entry 1aul coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure of a highly stable DNA duplex conjugated to a minor groove binder.
Kumar S, Reed MW, Gamper HB, Gorn VV, Lukhtanov EA, Foti M, West J, Meyer RB, Schweitzer BI
Nucleic Acids Res 26 831-8 (1998)
PMID: 9443977

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113441 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
DNA (5'-D(P*THXP*GP*AP*TP*TP*AP*TP*CP*TP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 10 nucleotides
Theoretical weight: 3.74 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*CP*AP*GP*AP*TP*AP*AP*TP*CP*A)-3') Chain: B
Molecule details ›
Chain: B
Length: 10 nucleotides
Theoretical weight: 3.04 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: RESTRAINED MOLECULAR DYNAMICS/RELAXATION MATRIX REFINEMENT
Expression system: Not provided

Quick links

Citations

9 citation in other articles

3'-minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures.
Kutyavin et al. (2000)
8 more