› 1c53

X-ray diffraction
1.8Å resolution

S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD

Released:
DOI: 10.2210/pdb1c53/pdb
PDB entry 1c53 coloured by chain, front view.
PDB entry 1c53 coloured by chain, side view.
PDB entry 1c53 coloured by chain, top view.
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Primary publication:
S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method.
Nakagawa A, Higuchi Y, Yasuoka N, Katsube Y, Yagi T
J Biochem 108 701-3 (1990)
PMID: 1964450

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132253 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c-553 Chain: A
Molecule details ›
Chain: A
Length: 79 amino acids
Theoretical weight: 8.41 KDa
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Expression system: Not provided
UniProt:
  • Canonical: P00120 (Residues: 24-102; Coverage: 100%)
Gene name: DvMF_0538
Sequence domains: Cytochrome c

Ligands and Environments

1 bound ligand:
Ligand HEM 1 x HEM
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P43212
Unit cell:
a: 42.7Å b: 42.7Å c: 103.4Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.194 not available not available
Expression system: Not provided

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Citations

2 review citations

Anomalous diffraction in crystallographic phase evaluation.
Hendrickson WA. (2014)
1 more