› 1cs7

X-ray diffraction
3.2Å resolution

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Released:
DOI: 10.2210/pdb1cs7/pdb
PDB entry 1cs7 coloured by chain, front view.
PDB entry 1cs7 coloured by chain, side view.
PDB entry 1cs7 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure and Photoinduced Electron Transfer in Exceptionally Stable Synthetic DNA Hairpins with Stilbenediether Linkers
Lewis FD, Liu X, Wu Y, Miller SE, Wasielewski MR, Letsinger RL, Sanishvili R, Joachimiak A, Tereshko V, Egli M
J. Am. Chem. Soc. 121 9905-9906 (1999)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113558 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02)*CP*AP*AP*AP*AP*C)-3' Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 13 nucleotides
Theoretical weight: 4.1 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand SR 4 x SR
1 modified residue:
Ligand BRU 4 x BRU

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 27.76Å b: 67.89Å c: 61.83Å
α: 90° β: 96.8° γ: 90°
R-values:
R R work R free
0.257 0.257 0.266
Expression system: Not provided

Quick links

Citations

2 mentions without citation

A large-scale association study for nanoparticle C60 uncovers mechanisms of nanotoxicity disrupting the native conformations of DNA/RNA.
Xu et al. (2012)
1 more