› 1ct5

X-ray diffraction
2Å resolution

CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL

Released:
DOI: 10.2210/pdb1ct5/pdb
PDB entry 1ct5 coloured by chain, front view.
PDB entry 1ct5 coloured by chain, side view.
PDB entry 1ct5 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Structure of a yeast hypothetical protein selected by a structural genomics approach.
Eswaramoorthy S, Gerchman S, Graziano V, Kycia H, Studier FW, Swaminathan S
Acta Crystallogr D Biol Crystallogr 59 127-35 (2003)
PMID: 12499548

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153574 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxal phosphate homeostasis protein Chain: A
Molecule details ›
Chain: A
Length: 256 amino acids
Theoretical weight: 29.17 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38197 (Residues: 2-257; Coverage: 100%)
Gene names: YBL036C, YBL0413
Sequence domains: Alanine racemase, N-terminal domain
Structure domains: Alanine racemase

Ligands and Environments

1 bound ligand:
Ligand PLP 1 x PLP
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X12C
Spacegroup: P212121
Unit cell:
a: 49.052Å b: 65.823Å c: 93.052Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.196 0.245
Expression system: Saccharomyces cerevisiae

Quick links

Citations

4 review citations

A genomic overview of pyridoxal-phosphate-dependent enzymes.
Percudani et al. (2003)
3 more

7 mentions without citation

The Conserved Family of the Pyridoxal Phosphate-Binding Protein (PLPBP) and Its Cyanobacterial Paradigm PipY.
Tremiño et al. (2022)
6 more