› 1d0t

Solution NMR

SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN

Released:
DOI: 10.2210/pdb1d0t/pdb
PDB entry 1d0t coloured by chain, ensemble of 10 models, front view.
PDB entry 1d0t coloured by chain, ensemble of 10 models, side view.
PDB entry 1d0t coloured by chain, ensemble of 10 models, top view.
Source organism: Synthetic construct
Primary publication:
Phosphorothioate substitution can substantially alter RNA conformation.
Smith JS, Nikonowicz EP
Biochemistry 39 5642-52 (2000)
PMID: 10801314

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195986 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE Chain: A
Molecule details ›
Chain: A
Length: 21 nucleotides
Theoretical weight: 6.81 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand SRA 5 x SRA

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing and molecular dynamics refinement
Expression system: Not provided

Quick links

Citations

5 review citations

Metal ion binding to catalytic RNA molecules.
DeRose VJ. (2003)
4 more

2 mentions without citation

Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.
Thapar et al. (2014)
1 more