› 1d31

X-ray diffraction
2.6Å resolution

THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS

Released:
DOI: 10.2210/pdb1d31/pdb
PDB entry 1d31 coloured by chain, front view.
PDB entry 1d31 coloured by chain, side view.
PDB entry 1d31 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Three-dimensional structures of bulge-containing DNA fragments.
Joshua-Tor L, Frolow F, Appella E, Hope H, Rabinovich D, Sussman JL
J Mol Biol 225 397-431 (1992)
PMID: 1593627

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113592 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 13 nucleotides
Theoretical weight: 3.98 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: C2
Unit cell:
a: 78.48Å b: 42.84Å c: 25.16Å
α: 90° β: 99.36° γ: 90°
R-values:
R R work R free
0.186 not available not available
Expression system: Not provided

Quick links

Citations

11 review citations

Mechanism of a genetic glissando: structural biology of indel mutations.
Garcia-Diaz et al. (2006)
10 more