› 1dcv

X-ray diffraction
2.5Å resolution

B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE

Released:
DOI: 10.2210/pdb1dcv/pdb
PDB entry 1dcv coloured by chain, front view.
PDB entry 1dcv coloured by chain, side view.
PDB entry 1dcv coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Eichman BF, Vargason JM, Mooers BH, Ho PS
Proc Natl Acad Sci U S A 97 3971-6 (2000)
PMID: 10760268

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113670 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: C2
Unit cell:
a: 64.1Å b: 25.9Å c: 39.9Å
α: 90° β: 122° γ: 90°
R-values:
R R work R free
0.207 0.207 0.317
Expression system: Not provided

Quick links

Citations

22 review citations

The Halogen Bond.
Cavallo et al. (2016)
21 more

9 mentions without citation

An Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent Applications.
Lemkul et al. (2016)
8 more