› 1dlz

Solution NMR

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

Released:
DOI: 10.2210/pdb1dlz/pdb
PDB entry 1dlz coloured by chain, ensemble of 20 models, front view.
PDB entry 1dlz coloured by chain, ensemble of 20 models, side view.
PDB entry 1dlz coloured by chain, ensemble of 20 models, top view.
Source organism: Emericellopsis salmosynnemata
Primary publication:
NMR structure of the channel-former zervamicin IIB in isotropic solvents.
Balashova TA, Shenkarev ZO, Tagaev AA, Ovchinnikova TV, Raap J, Arseniev AS
FEBS Lett 466 333-6 (2000)
PMID: 10682854

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-162159 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ZERVAMICIN IIB Chain: A
Molecule details ›
Chain: A
Length: 17 amino acids
Theoretical weight: 1.82 KDa
Source organism: Emericellopsis salmosynnemata

Ligands and Environments

No bound ligands
4 modified residues:
Ligand DIV 1 x DIV
Ligand AIB 4 x AIB
Ligand HYP 2 x HYP
Ligand PHL 1 x PHL

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing

Quick links

Citations

4 review citations

Aib residues in peptaibiotics and synthetic sequences: analysis of nonhelical conformations.
Aravinda et al. (2008)
3 more

1 mention without citation

Peptaibol zervamicin IIb structure and dynamics refinement from transhydrogen bond J couplings.
Shenkarev et al. (2004)