› 1dmg

X-ray diffraction
1.7Å resolution

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L4

Released:
DOI: 10.2210/pdb1dmg/pdb
PDB entry 1dmg coloured by chain, front view.
PDB entry 1dmg coloured by chain, side view.
PDB entry 1dmg coloured by chain, top view.
Source organism: Thermotoga maritima
Primary publication:
Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon.
Worbs M, Huber R, Wahl MC
EMBO J 19 807-18 (2000)
PMID: 10698923

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153672 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Large ribosomal subunit protein uL4 Chain: A
Molecule details ›
Chain: A
Length: 225 amino acids
Theoretical weight: 25.69 KDa
Source organism: Thermotoga maritima
Expression system: Escherichia coli
UniProt:
  • Canonical: P38516 (Residues: 2-226; Coverage: 96%)
Gene names: TM_1499, rplD
Sequence domains: Ribosomal protein L4/L1 family
Structure domains: Ribosomal Protein L4; Chain: A;

Ligands and Environments

1 bound ligand:
Ligand CIT 1 x CIT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MPG/DESY, HAMBURG BEAMLINE BW6
Spacegroup: P212121
Unit cell:
a: 43Å b: 48.6Å c: 112Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.208 0.208 0.237
Expression system: Escherichia coli

Quick links

Citations

7 review citations

Natively unfolded proteins: a point where biology waits for physics.
Uversky VN. (2002)
6 more

2 mentions without citation

Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon.
Worbs et al. (2000)
1 more