› 1dnf

X-ray diffraction
1.5Å resolution

EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG)

Released:
DOI: 10.2210/pdb1dnf/pdb
PDB entry 1dnf coloured by chain, front view.
PDB entry 1dnf coloured by chain, side view.
PDB entry 1dnf coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Effects of 5-fluorouracil/guanine wobble base pairs in Z-DNA: molecular and crystal structure of d(CGCGFG).
Coll M, Saal D, Frederick CA, Aymami J, Rich A, Wang AH
Nucleic Acids Res 17 911-23 (1989)
PMID: 2922276

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113695 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.83 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P212121
Unit cell:
a: 17.36Å b: 31.15Å c: 45.4Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.172 not available not available
Expression system: Not provided

Quick links

Citations

3 review citations

Oligonucleotide structure: a decade of results from single crystal X-ray diffraction studies.
Kennard et al. (1989)
2 more

1 mention without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)