1du3

X-ray diffraction
2.2Å resolution

Crystal structure of TRAIL-SDR5

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-127108 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Tumor necrosis factor receptor superfamily member 10B Chains: A, B, C, G, H, I
Molecule details ›
Chains: A, B, C, G, H, I
Length: 130 amino acids
Theoretical weight: 14.58 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O14763 (Residues: 54-183; Coverage: 33%)
Gene names: DR5, KILLER, TNFRSF10B, TRAILR2, TRICK2, UNQ160/PRO186, ZTNFR9
Sequence domains: TNFR/NGFR cysteine-rich region
Structure domains: Tumor Necrosis Factor Receptor, subunit A, domain 2
Tumor necrosis factor ligand superfamily member 10 Chains: D, E, F, J, K, L
Molecule details ›
Chains: D, E, F, J, K, L
Length: 168 amino acids
Theoretical weight: 19.52 KDa
Source organism: Homo sapiens
Expression system: Bacteria
UniProt:
  • Canonical: P50591 (Residues: 114-281; Coverage: 60%)
Gene names: APO2L, TNFSF10, TRAIL
Sequence domains: TNF(Tumour Necrosis Factor) family
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: P21
Unit cell:
a: 68.63Å b: 124.81Å c: 128.37Å
α: 90° β: 104.489° γ: 90°
R-values:
R R work R free
0.212 0.291 0.291
Expression systems:
  • Escherichia coli
  • Bacteria