› 1evv

X-ray diffraction
2Å resolution

CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION

Released:
DOI: 10.2210/pdb1evv/pdb
PDB entry 1evv coloured by chain, front view.
PDB entry 1evv coloured by chain, side view.
PDB entry 1evv coloured by chain, top view.
Source organism: Saccharomyces
Primary publication:
The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.
Jovine L, Djordjevic S, Rhodes D
J Mol Biol 301 401-14 (2000)
PMID: 10926517

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195823 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
PHENYLALANINE TRANSFER RNA Chain: A
Molecule details ›
Chain: A
Length: 76 nucleotides
Theoretical weight: 24.89 KDa
Source organism: Saccharomyces
Sequence domains: tRNA

Ligands and Environments

2 bound ligands:
Ligand MG 10 x MG
Ligand SPM 1 x SPM
11 modified residues:
Ligand 2MG 1 x 2MG
Ligand H2U 2 x H2U
Ligand M2G 1 x M2G
Ligand OMC 1 x OMC
Ligand OMG 1 x OMG
Ligand YG 1 x YG
Ligand PSU 2 x PSU
Ligand 5MC 2 x 5MC
Ligand 7MG 1 x 7MG
Ligand 5MU 1 x 5MU
Ligand 1MA 1 x 1MA

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P21
Unit cell:
a: 55.252Å b: 32.988Å c: 61.882Å
α: 90° β: 90.38° γ: 90°
R-values:
R R work R free
0.227 0.227 0.263

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Citations

19 review citations

Ions and RNA folding.
Draper et al. (2005)
18 more

32 mentions without citation

Recent advances in macromolecular hydrodynamic modeling.
Aragon SR. (2011)
31 more