› 1f2n

X-ray diffraction
2.8Å resolution

RICE YELLOW MOTTLE VIRUS

Released:
DOI: 10.2210/pdb1f2n/pdb
PDB entry 1f2n coloured by chain, front view.
PDB entry 1f2n coloured by chain, side view.
PDB entry 1f2n coloured by chain, top view.
Source organism: Rice yellow mottle virus
Primary publication:
3D domain swapping modulates the stability of members of an icosahedral virus group.
Qu C, Liljas L, Opalka N, Brugidou C, Yeager M, Beachy RN, Fauquet CM, Johnson JE, Lin T
Structure 8 1095-103 (2000)
PMID: 11080631

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183101 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 238 amino acids
Theoretical weight: 26.01 KDa
Source organism: Rice yellow mottle virus
UniProt:
  • Canonical: Q86527 (Residues: 2-239; Coverage: 100%)
Sequence domains: Viral coat protein (S domain)
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand CA 3 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CHESS BEAMLINE F1
Spacegroup: P21
Unit cell:
a: 283.5Å b: 401.8Å c: 284Å
α: 90° β: 89.4° γ: 90°
R-values:
R R work R free
0.246 0.218 0.219

Quick links

Citations

6 review citations

Viral calciomics: interplays between Ca2+ and virus.
Zhou et al. (2009)
5 more

7 mentions without citation

A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement, and aphid transmission.
Lee et al. (2005)
6 more