› 1fjj

X-ray diffraction
1.66Å resolution

CRYSTAL STRUCTURE OF E.COLI YBHB PROTEIN, A NEW MEMBER OF THE MAMMALIAN PEBP FAMILY

Released:
DOI: 10.2210/pdb1fjj/pdb
PDB entry 1fjj coloured by chain, front view.
PDB entry 1fjj coloured by chain, side view.
PDB entry 1fjj coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Crystal structures of YBHB and YBCL from Escherichia coli, two bacterial homologues to a Raf kinase inhibitor protein.
Serre L, Pereira de Jesus K, Zelwer C, Bureaud N, Schoentgen F, Bénédetti H
J Mol Biol 310 617-34 (2001)
PMID: 11439028

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146420 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
UPF0098 protein YbhB Chain: A
Molecule details ›
Chain: A
Length: 159 amino acids
Theoretical weight: 17.41 KDa
Source organism: Escherichia coli
UniProt:
  • Canonical: P12994 (Residues: 1-158; Coverage: 100%)
Gene names: JW0756, b0773, ybhB
Sequence domains: Phosphatidylethanolamine-binding protein
Structure domains: PEBP-like

Ligands and Environments

1 bound ligand:
Ligand EPE 1 x EPE
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM30A
Spacegroup: P3221
Unit cell:
a: 85.47Å b: 85.47Å c: 73.3Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.18 0.18 0.197

Quick links

Citations

10 review citations

Lipoproteins of Mycobacterium tuberculosis: an abundant and functionally diverse class of cell envelope components.
Sutcliffe et al. (2004)
9 more

3 mentions without citation

Electrostatic Interactions Govern Extreme Nascent Protein Ejection Times from Ribosomes and Can Delay Ribosome Recycling.
Nissley et al. (2020)
2 more